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  5. Solyc12g099620

Solyc12g099620


Description : Pentatricopeptide repeat-containing protein (AHRD V3.3 *** A0A118JVA8_CYNCS)


Gene families : OG_42_0009638 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0009638_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Solanum release: Solyc12g099620
Cluster HCCA clusters: Cluster_105

Target Alias Description ECC score Gene Family Method Actions
Seita.2G426900.1 No alias RNA editing factor *(GRS1/EMP9) 0.04 Orthogroups_2024-Update
Sobic.002G411700.1 No alias RNA editing factor *(GRS1/EMP9) 0.07 Orthogroups_2024-Update
Sopen12g034290 No alias PPR repeat family 0.05 Orthogroups_2024-Update

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
BP GO:0006298 mismatch repair IEP Predicted GO
MF GO:0008194 UDP-glycosyltransferase activity IEP Predicted GO
MF GO:0008270 zinc ion binding IEP Predicted GO
MF GO:0030983 mismatched DNA binding IEP Predicted GO
CC GO:0033588 Elongator holoenzyme complex IEP Predicted GO
MF GO:0043167 ion binding IEP Predicted GO
MF GO:0043169 cation binding IEP Predicted GO
MF GO:0046872 metal ion binding IEP Predicted GO
MF GO:0046914 transition metal ion binding IEP Predicted GO
InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_repeat 225 273
IPR002885 Pentatricopeptide_repeat 527 572
IPR002885 Pentatricopeptide_repeat 300 329
IPR002885 Pentatricopeptide_repeat 426 448
IPR002885 Pentatricopeptide_repeat 398 423
IPR002885 Pentatricopeptide_repeat 102 122
No external refs found!