Description : chromatin remodeling 5 (AHRD V3.3 *** AT2G13370.3)
Gene families : OG_42_0000148 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000148_tree
Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.
Type | Description | Actions |
---|---|---|
Neighborhood | Solanum release: Solyc12g099910 | |
Cluster | HCCA clusters: Cluster_97 |
Target | Alias | Description | ECC score | Gene Family Method | Actions |
---|---|---|---|---|---|
Glyma.05G131500 | No alias | chromatin remodeling 4 | 0.03 | Orthogroups_2024-Update | |
Mp3g15030.1 | No alias | chromatin remodeling factor (Iswi) | 0.03 | Orthogroups_2024-Update | |
Mp5g24460.1 | No alias | chromatin remodeling factor (Chd3/Mi-2) | 0.02 | Orthogroups_2024-Update | |
Pp1s235_76V6 | No alias | chromatin remodeling complex subunit | 0.02 | Orthogroups_2024-Update | |
Sobic.009G040600.1 | No alias | SMARCA component *(SYD/BRM/MINU) | 0.03 | Orthogroups_2024-Update | |
Sopen06g024260 | No alias | SNF2 family N-terminal domain | 0.03 | Orthogroups_2024-Update | |
Sopen12g034530 | No alias | SNF2 family N-terminal domain | 0.03 | Orthogroups_2024-Update | |
evm.model.tig00000863.2 | No alias | (at3g54280 : 205.0) ROOT GROWTH DEFECTIVE 3 (RGD3);... | 0.01 | Orthogroups_2024-Update |
Type | GO Term | Name | Evidence | Source |
---|---|---|---|---|
MF | GO:0005524 | ATP binding | IEA | InterProScan predictions |
Type | GO Term | Name | Evidence | Source |
---|---|---|---|---|
MF | GO:0003676 | nucleic acid binding | IEP | Predicted GO |
MF | GO:0003723 | RNA binding | IEP | Predicted GO |
MF | GO:0003779 | actin binding | IEP | Predicted GO |
MF | GO:0004813 | alanine-tRNA ligase activity | IEP | Predicted GO |
MF | GO:0005515 | protein binding | IEP | Predicted GO |
BP | GO:0006419 | alanyl-tRNA aminoacylation | IEP | Predicted GO |
BP | GO:0006914 | autophagy | IEP | Predicted GO |
MF | GO:0008092 | cytoskeletal protein binding | IEP | Predicted GO |
BP | GO:0034660 | ncRNA metabolic process | IEP | Predicted GO |
BP | GO:0061919 | process utilizing autophagic mechanism | IEP | Predicted GO |
No external refs found! |