Solyc12g099910

Description : chromatin remodeling 5 (AHRD V3.3 *** AT2G13370.3)

Gene families : OG_42_0000148 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000148_tree

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	Solanum release: Solyc12g099910
Cluster	HCCA clusters: Cluster_97

Target	Alias	Description	ECC score	Gene Family Method
Glyma.05G131500	No alias	chromatin remodeling 4	0.03	Orthogroups_2024-Update
Mp3g15030.1	No alias	chromatin remodeling factor (Iswi)	0.03	Orthogroups_2024-Update
Mp5g24460.1	No alias	chromatin remodeling factor (Chd3/Mi-2)	0.02	Orthogroups_2024-Update
Pp1s235_76V6	No alias	chromatin remodeling complex subunit	0.02	Orthogroups_2024-Update
Sobic.009G040600.1	No alias	SMARCA component *(SYD/BRM/MINU)	0.03	Orthogroups_2024-Update
Sopen06g024260	No alias	SNF2 family N-terminal domain	0.03	Orthogroups_2024-Update
Sopen12g034530	No alias	SNF2 family N-terminal domain	0.03	Orthogroups_2024-Update
evm.model.tig00000863.2	No alias	(at3g54280 : 205.0) ROOT GROWTH DEFECTIVE 3 (RGD3);...	0.01	Orthogroups_2024-Update

Type	GO Term	Name	Evidence	Source
MF	GO:0000166	nucleotide binding	None	Extended
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0005488	binding	None	Extended
MF	GO:0005524	ATP binding	IEA	InterProScan predictions
MF	GO:0008144	drug binding	None	Extended
MF	GO:0017076	purine nucleotide binding	None	Extended
MF	GO:0030554	adenyl nucleotide binding	None	Extended
MF	GO:0032553	ribonucleotide binding	None	Extended
MF	GO:0032555	purine ribonucleotide binding	None	Extended
MF	GO:0032559	adenyl ribonucleotide binding	None	Extended
MF	GO:0035639	purine ribonucleoside triphosphate binding	None	Extended
MF	GO:0036094	small molecule binding	None	Extended
MF	GO:0043167	ion binding	None	Extended
MF	GO:0043168	anion binding	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
MF	GO:0097367	carbohydrate derivative binding	None	Extended
MF	GO:1901265	nucleoside phosphate binding	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended

Type	GO Term	Name	Evidence	Source
MF	GO:0003676	nucleic acid binding	IEP	Predicted GO
MF	GO:0003723	RNA binding	IEP	Predicted GO
MF	GO:0003779	actin binding	IEP	Predicted GO
MF	GO:0004813	alanine-tRNA ligase activity	IEP	Predicted GO
MF	GO:0005515	protein binding	IEP	Predicted GO
BP	GO:0006419	alanyl-tRNA aminoacylation	IEP	Predicted GO
BP	GO:0006914	autophagy	IEP	Predicted GO
MF	GO:0008092	cytoskeletal protein binding	IEP	Predicted GO
BP	GO:0034660	ncRNA metabolic process	IEP	Predicted GO
BP	GO:0061919	process utilizing autophagic mechanism	IEP	Predicted GO

InterPro domains	Description	Start	Stop
IPR000330	SNF2_N	610	882
IPR001650	Helicase_C	911	1024
IPR023780	Chromo_domain	503	557
IPR025260	DUF4208	1501	1594

External Links

No external refs found!