Sopen00g001090

Description : Reverse transcriptase (RNA-dependent DNA polymerase)

Gene families : OG_42_0000368 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000368_tree

Sequence : coding (download), protein (download)

Attention: This gene has low abundance.

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	Solanum release: Sopen00g001090
Cluster	HCCA clusters: Cluster_287

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	IEA	InterProScan predictions
MF	GO:0003824	catalytic activity	None	Extended
MF	GO:0004518	nuclease activity	None	Extended
MF	GO:0004519	endonuclease activity	None	Extended
MF	GO:0004521	endoribonuclease activity	None	Extended
MF	GO:0004523	RNA-DNA hybrid ribonuclease activity	IEA	InterProScan predictions
MF	GO:0004540	ribonuclease activity	None	Extended
MF	GO:0005488	binding	None	Extended
MF	GO:0016787	hydrolase activity	None	Extended
MF	GO:0016788	hydrolase activity, acting on ester bonds	None	Extended
MF	GO:0016891	endoribonuclease activity, producing 5'-phosphomonoesters	None	Extended
MF	GO:0016893	endonuclease activity, active with either ribo- or deoxyribonucleic acids and producing 5'-phosphomonoesters	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
MF	GO:0140098	catalytic activity, acting on RNA	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended

Type	GO Term	Name	Evidence	Source
No Predicted GO terms available for this sequence

InterPro domains	Description	Start	Stop
IPR000477	RT_dom	1525	1776
IPR000477	RT_dom	3554	3811
IPR002156	RNaseH_domain	2079	2199
IPR025836	Zn_knuckle_CX2CX4HX4C	2778	2803
IPR025836	Zn_knuckle_CX2CX4HX4C	607	637
IPR026960	RVT-Znf	1870	1955
IPR025558	DUF4283	2610	2752
IPR025558	DUF4283	445	585

External Links

No external refs found!