1. Home
  2. Species
  3. Solanum lycopersicum
  4. Sequence
  5. Solyc01g103410

Solyc01g103410


Description : KH domain-containing protein (AHRD V3.3 *** W9R1Z3_9ROSA)


Gene families : OG_42_0000701 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000701_tree

Sequence : coding (download), protein (download)


Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Solanum release: Solyc01g103410
Cluster HCCA clusters: Cluster_28

Target Alias Description ECC score Gene Family Method Actions
A4A49_39308 No alias kh domain-containing protein 0.03 Orthogroups_2024-Update
At2g38610 No alias KH domain-containing protein At2g38610... 0.03 Orthogroups_2024-Update
Bradi1g04120 No alias RNA-binding KH domain-containing protein 0.03 Orthogroups_2024-Update
Bradi2g22090 No alias RNA-binding KH domain-containing protein 0.03 Orthogroups_2024-Update
Brara.A01635.1 No alias STAR-type post-transcriptionally regulatory factor 0.03 Orthogroups_2024-Update
Brara.C01953.1 No alias STAR-type post-transcriptionally regulatory factor 0.04 Orthogroups_2024-Update
LOC_Os03g60110 No alias KH domain containing protein, putative, expressed 0.02 Orthogroups_2024-Update
MA_22856g0010 No alias (at4g26480 : 141.0) RNA-binding KH domain-containing... 0.02 Orthogroups_2024-Update
Seita.9G038800.1 No alias STAR-type post-transcriptionally regulatory factor 0.03 Orthogroups_2024-Update
Sobic.004G256600.1 No alias STAR-type post-transcriptionally regulatory factor 0.02 Orthogroups_2024-Update
Sopen01g045760 No alias hypothetical protein 0.04 Orthogroups_2024-Update
Sopen06g034080 No alias hypothetical protein 0.03 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0003723 RNA binding IEA InterProScan predictions
Toggle parental
Type GO Term Name Evidence Source
MF GO:0000166 nucleotide binding IEP Predicted GO
CC GO:0000221 vacuolar proton-transporting V-type ATPase, V1 domain IEP Predicted GO
MF GO:0001882 nucleoside binding IEP Predicted GO
MF GO:0001883 purine nucleoside binding IEP Predicted GO
MF GO:0004650 polygalacturonase activity IEP Predicted GO
MF GO:0005515 protein binding IEP Predicted GO
MF GO:0005524 ATP binding IEP Predicted GO
MF GO:0005525 GTP binding IEP Predicted GO
BP GO:0005975 carbohydrate metabolic process IEP Predicted GO
MF GO:0008144 drug binding IEP Predicted GO
BP GO:0015988 energy coupled proton transmembrane transport, against electrochemical gradient IEP Predicted GO
BP GO:0015991 ATP hydrolysis coupled proton transport IEP Predicted GO
CC GO:0016459 myosin complex IEP Predicted GO
MF GO:0016462 pyrophosphatase activity IEP Predicted GO
MF GO:0016787 hydrolase activity IEP Predicted GO
MF GO:0016817 hydrolase activity, acting on acid anhydrides IEP Predicted GO
MF GO:0016818 hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides IEP Predicted GO
MF GO:0017076 purine nucleotide binding IEP Predicted GO
MF GO:0019001 guanyl nucleotide binding IEP Predicted GO
MF GO:0030554 adenyl nucleotide binding IEP Predicted GO
MF GO:0031072 heat shock protein binding IEP Predicted GO
MF GO:0032549 ribonucleoside binding IEP Predicted GO
MF GO:0032550 purine ribonucleoside binding IEP Predicted GO
MF GO:0032553 ribonucleotide binding IEP Predicted GO
MF GO:0032555 purine ribonucleotide binding IEP Predicted GO
MF GO:0032559 adenyl ribonucleotide binding IEP Predicted GO
MF GO:0032561 guanyl ribonucleotide binding IEP Predicted GO
CC GO:0033178 proton-transporting two-sector ATPase complex, catalytic domain IEP Predicted GO
CC GO:0033180 proton-transporting V-type ATPase, V1 domain IEP Predicted GO
MF GO:0035639 purine ribonucleoside triphosphate binding IEP Predicted GO
MF GO:0036094 small molecule binding IEP Predicted GO
MF GO:0043167 ion binding IEP Predicted GO
MF GO:0043168 anion binding IEP Predicted GO
CC GO:0044437 vacuolar part IEP Predicted GO
MF GO:0047429 nucleoside-triphosphate diphosphatase activity IEP Predicted GO
MF GO:0051082 unfolded protein binding IEP Predicted GO
BP GO:0090662 ATP hydrolysis coupled transmembrane transport IEP Predicted GO
MF GO:0097367 carbohydrate derivative binding IEP Predicted GO
BP GO:0099131 ATP hydrolysis coupled ion transmembrane transport IEP Predicted GO
BP GO:0099132 ATP hydrolysis coupled cation transmembrane transport IEP Predicted GO
MF GO:1901265 nucleoside phosphate binding IEP Predicted GO
InterPro domains Description Start Stop
IPR032377 STAR_dimer 35 67
IPR004088 KH_dom_type_1 158 188
No external refs found!