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  5. Sopen00g001810

Sopen00g001810


Description : Reverse transcriptase (RNA-dependent DNA polymerase)


Gene families : OG_42_0000004 (Orthogroups_2024-Update) Phylogenetic Tree(s): No tree available for this familyContact

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Solanum release: Sopen00g001810
Cluster HCCA clusters: Cluster_296

Target Alias Description ECC score Gene Family Method Actions
Cre08.g358542 No alias Function unknown 0.01 Orthogroups_2024-Update
Solyc03g115130 No alias No description available 0.02 Orthogroups_2024-Update
Solyc04g040100 No alias No description available 0.03 Orthogroups_2024-Update
Solyc08g043150 No alias No description available 0.03 Orthogroups_2024-Update
Solyc10g012010 No alias No description available 0.03 Orthogroups_2024-Update
Sopen00g001490 No alias Reverse transcriptase (RNA-dependent DNA polymerase) 0.02 Orthogroups_2024-Update
Sopen00g005290 No alias Reverse transcriptase (RNA-dependent DNA polymerase) 0.03 Orthogroups_2024-Update
Sopen00g009040 No alias Reverse transcriptase (RNA-dependent DNA polymerase) 0.03 Orthogroups_2024-Update
Sopen01g012260 No alias Retroviral aspartyl protease 0.03 Orthogroups_2024-Update
Sopen01g012860 No alias Reverse transcriptase (RNA-dependent DNA polymerase) 0.01 Orthogroups_2024-Update
Sopen01g026660 No alias Reverse transcriptase (RNA-dependent DNA polymerase) 0.03 Orthogroups_2024-Update
Sopen02g005710 No alias Retroviral aspartyl protease 0.03 Orthogroups_2024-Update
Sopen04g009770 No alias Integrase core domain 0.03 Orthogroups_2024-Update
Sopen04g019550 No alias hypothetical protein 0.03 Orthogroups_2024-Update
Sopen05g018490 No alias Reverse transcriptase (RNA-dependent DNA polymerase) 0.03 Orthogroups_2024-Update
Sopen05g022330 No alias Reverse transcriptase (RNA-dependent DNA polymerase) 0.03 Orthogroups_2024-Update
Sopen05g023200 No alias Retroviral aspartyl protease 0.03 Orthogroups_2024-Update
Sopen05g023460 No alias Integrase core domain 0.01 Orthogroups_2024-Update
Sopen05g026780 No alias Integrase core domain 0.01 Orthogroups_2024-Update
Sopen06g012360 No alias Reverse transcriptase (RNA-dependent DNA polymerase) 0.03 Orthogroups_2024-Update
Sopen07g004930 No alias Reverse transcriptase (RNA-dependent DNA polymerase) 0.02 Orthogroups_2024-Update
Sopen07g012430 No alias Apocytochrome F, C-terminal 0.02 Orthogroups_2024-Update
Sopen07g021480 No alias Reverse transcriptase (RNA-dependent DNA polymerase) 0.01 Orthogroups_2024-Update
Sopen08g007650 No alias Reverse transcriptase (RNA-dependent DNA polymerase) 0.03 Orthogroups_2024-Update
Sopen08g011030 No alias Reverse transcriptase (RNA-dependent DNA polymerase) 0.03 Orthogroups_2024-Update
Sopen09g008850 No alias Reverse transcriptase (RNA-dependent DNA polymerase) 0.02 Orthogroups_2024-Update
Sopen11g012620 No alias Reverse transcriptase (RNA-dependent DNA polymerase) 0.02 Orthogroups_2024-Update
Sopen11g023050 No alias Reverse transcriptase (RNA-dependent DNA polymerase) 0.03 Orthogroups_2024-Update
Sopen12g011740 No alias Integrase core domain 0.02 Orthogroups_2024-Update

Type GO Term Name Evidence Source
BP GO:0015074 DNA integration IEA InterProScan predictions
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Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence
InterPro domains Description Start Stop
IPR001584 Integrase_cat-core 1648 1758
IPR023780 Chromo_domain 1895 1949
IPR005162 Retrotrans_gag_dom 814 907
IPR000477 RT_dom 1215 1348
No external refs found!