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Description : Regulator of nonsense transcripts 3A (AHRD V3.3 *** A0A151T884_CAJCA)
Gene families : OG_42_0004004 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0004004_tree
Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.
| Type | Description | Actions |
|---|---|---|
| Neighborhood | Solanum release: Solyc01g103420 | |
| Cluster | HCCA clusters: Cluster_78 |
| Target | Alias | Description | ECC score | Gene Family Method | Actions |
|---|---|---|---|---|---|
| Brara.E01837.1 | No alias | component *(UPF3) of RNA quality control Exon Junction complex | 0.03 | Orthogroups_2024-Update | |
| Brara.H00556.1 | No alias | component *(UPF3) of RNA quality control Exon Junction complex | 0.04 | Orthogroups_2024-Update | |
| GRMZM2G139419 | No alias | Smg-4/UPF3 family protein | 0.02 | Orthogroups_2024-Update | |
| PSME_00007265-RA | No alias | no hits & (original description: no original description) | 0.03 | Orthogroups_2024-Update | |
| Pp1s13_385V6 | No alias | regulator of nonsense transcripts | 0.03 | Orthogroups_2024-Update |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
No GO annotation available for this sequence |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
| MF | GO:0000175 | 3'-5'-exoribonuclease activity | IEP | Predicted GO |
| BP | GO:0000289 | nuclear-transcribed mRNA poly(A) tail shortening | IEP | Predicted GO |
| BP | GO:0000956 | nuclear-transcribed mRNA catabolic process | IEP | Predicted GO |
| MF | GO:0004177 | aminopeptidase activity | IEP | Predicted GO |
| MF | GO:0004197 | cysteine-type endopeptidase activity | IEP | Predicted GO |
| MF | GO:0004392 | heme oxygenase (decyclizing) activity | IEP | Predicted GO |
| MF | GO:0004518 | nuclease activity | IEP | Predicted GO |
| MF | GO:0004527 | exonuclease activity | IEP | Predicted GO |
| MF | GO:0004532 | exoribonuclease activity | IEP | Predicted GO |
| MF | GO:0004535 | poly(A)-specific ribonuclease activity | IEP | Predicted GO |
| BP | GO:0006401 | RNA catabolic process | IEP | Predicted GO |
| BP | GO:0006402 | mRNA catabolic process | IEP | Predicted GO |
| BP | GO:0006778 | porphyrin-containing compound metabolic process | IEP | Predicted GO |
| BP | GO:0006788 | heme oxidation | IEP | Predicted GO |
| BP | GO:0007034 | vacuolar transport | IEP | Predicted GO |
| MF | GO:0016151 | nickel cation binding | IEP | Predicted GO |
| MF | GO:0016772 | transferase activity, transferring phosphorus-containing groups | IEP | Predicted GO |
| MF | GO:0016779 | nucleotidyltransferase activity | IEP | Predicted GO |
| MF | GO:0016787 | hydrolase activity | IEP | Predicted GO |
| MF | GO:0016796 | exonuclease activity, active with either ribo- or deoxyribonucleic acids and producing 5'-phosphomonoesters | IEP | Predicted GO |
| MF | GO:0016896 | exoribonuclease activity, producing 5'-phosphomonoesters | IEP | Predicted GO |
| MF | GO:0030145 | manganese ion binding | IEP | Predicted GO |
| MF | GO:0033926 | glycopeptide alpha-N-acetylgalactosaminidase activity | IEP | Predicted GO |
| BP | GO:0042168 | heme metabolic process | IEP | Predicted GO |
| BP | GO:0042440 | pigment metabolic process | IEP | Predicted GO |
| BP | GO:0050790 | regulation of catalytic activity | IEP | Predicted GO |
| MF | GO:0140096 | catalytic activity, acting on a protein | IEP | Predicted GO |
| MF | GO:0140103 | catalytic activity, acting on a glycoprotein | IEP | Predicted GO |
| InterPro domains | Description | Start | Stop |
|---|---|---|---|
| IPR005120 | UPF3_dom | 7 | 168 |
| No external refs found! |