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  5. Solyc01g103550

Solyc01g103550


Description : LOW QUALITY:Transcription factor, MADS-box (AHRD V3.3 *-* A0A103XMZ4_CYNCS)


Gene families : OG_42_0000009 (Orthogroups_2024-Update) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Solanum release: Solyc01g103550
Cluster HCCA clusters: Cluster_85

Target Alias Description ECC score Gene Family Method Actions
A4A49_27621 No alias agamous-like mads-box protein agl9 0.03 Orthogroups_2024-Update
Bradi2g59119 No alias AGAMOUS-like 14 0.02 Orthogroups_2024-Update
Brara.C01461.1 No alias MADS/AGL-type transcription factor 0.04 Orthogroups_2024-Update
Brara.E00519.1 No alias MADS/AGL-type transcription factor 0.03 Orthogroups_2024-Update
Brara.J01588.1 No alias component *(PISTILLATA) of AP3-PISTILLATA organ-identity... 0.03 Orthogroups_2024-Update
GRMZM2G137510 No alias AGAMOUS-like 8 0.03 Orthogroups_2024-Update
LOC_Os03g03070 No alias transcription factor, putative, expressed 0.03 Orthogroups_2024-Update
LOC_Os06g01890 No alias MADS-box transcription factor, putative, expressed 0.02 Orthogroups_2024-Update
LOC_Os08g41950 No alias OsMADS7 - MADS-box family gene with MIKCc type-box, expressed 0.02 Orthogroups_2024-Update
MA_276701g0010 No alias (at2g45660 : 110.0) Controls flowering and is required... 0.03 Orthogroups_2024-Update
Potri.004G010200 No alias AGAMOUS-like 62 0.03 Orthogroups_2024-Update
Seita.1G273400.1 No alias regulatory protein *(SEPALLATA) of floral meristem... 0.02 Orthogroups_2024-Update
Seita.3G098400.1 No alias MADS/AGL-type transcription factor 0.03 Orthogroups_2024-Update
Seita.5G143100.1 No alias MADS/AGL-type transcription factor 0.04 Orthogroups_2024-Update
Solyc10g017640 No alias MADS-box transcription factor (AHRD V3.3 *-* G7L1F7_MEDTR) 0.05 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0003677 DNA binding IEA InterProScan predictions
MF GO:0046983 protein dimerization activity IEA InterProScan predictions
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Type GO Term Name Evidence Source
MF GO:0004649 poly(ADP-ribose) glycohydrolase activity IEP Predicted GO
BP GO:0006820 anion transport IEP Predicted GO
BP GO:0008272 sulfate transport IEP Predicted GO
MF GO:0008509 anion transmembrane transporter activity IEP Predicted GO
MF GO:0015103 inorganic anion transmembrane transporter activity IEP Predicted GO
MF GO:0015116 sulfate transmembrane transporter activity IEP Predicted GO
BP GO:0015698 inorganic anion transport IEP Predicted GO
MF GO:0043565 sequence-specific DNA binding IEP Predicted GO
BP GO:0072348 sulfur compound transport IEP Predicted GO
MF GO:1901682 sulfur compound transmembrane transporter activity IEP Predicted GO
InterPro domains Description Start Stop
IPR002100 TF_MADSbox 11 51
No external refs found!