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  5. Sopen00g003390

Sopen00g003390


Description : Reverse transcriptase (RNA-dependent DNA polymerase)


Gene families : OG_42_0000841 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000841_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Solanum release: Sopen00g003390
Cluster HCCA clusters: Cluster_161

Target Alias Description ECC score Gene Family Method Actions
Sopen11g008050 No alias zinc-binding in reverse transcriptase 0.04 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEA InterProScan predictions
MF GO:0004523 RNA-DNA hybrid ribonuclease activity IEA InterProScan predictions
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Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence
InterPro domains Description Start Stop
IPR002156 RNaseH_domain 3591 3711
IPR025836 Zn_knuckle_CX2CX4HX4C 1905 1935
IPR025836 Zn_knuckle_CX2CX4HX4C 536 561
IPR000477 RT_dom 1094 1353
IPR000477 RT_dom 2871 3127
IPR025558 DUF4283 368 510
IPR025558 DUF4283 1743 1883
IPR026960 RVT-Znf 3382 3467
No external refs found!