Sopen00g004200

Description : PPR repeat family

Gene families : OG_42_0010109 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0010109_tree

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	Solanum release: Sopen00g004200
Cluster	HCCA clusters: Cluster_144

Target	Alias	Description	ECC score	Gene Family Method
Seita.9G202900.1	No alias	Unknown function	0.02	Orthogroups_2024-Update
Sobic.005G110400.1	No alias	Unknown function	0.03	Orthogroups_2024-Update
Solyc04g076800	No alias	Pentatricopeptide repeat-containing protein (AHRD V3.3...	0.05	Orthogroups_2024-Update

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0005488	binding	None	Extended
MF	GO:0008270	zinc ion binding	IEA	InterProScan predictions
MF	GO:0043167	ion binding	None	Extended
MF	GO:0043169	cation binding	None	Extended
MF	GO:0046872	metal ion binding	None	Extended
MF	GO:0046914	transition metal ion binding	None	Extended

Type	GO Term	Name	Evidence	Source
No Predicted GO terms available for this sequence

InterPro domains	Description	Start	Stop
IPR032867	DYW_dom	740	798
IPR032867	DYW_dom	619	730
IPR002885	Pentatricopeptide_repeat	520	543
IPR002885	Pentatricopeptide_repeat	307	331
IPR002885	Pentatricopeptide_repeat	231	279
IPR002885	Pentatricopeptide_repeat	130	177
IPR002885	Pentatricopeptide_repeat	447	492

External Links

No external refs found!