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  5. Sopen00g004320

Sopen00g004320


Description : PPR repeat family


Gene families : OG_42_0008823 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0008823_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Solanum release: Sopen00g004320
Cluster HCCA clusters: Cluster_124

Target Alias Description ECC score Gene Family Method Actions
GRMZM2G329293 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.03 Orthogroups_2024-Update
Sobic.010G085900.1 No alias Unknown function 0.04 Orthogroups_2024-Update
Solyc04g076070 No alias Pentatricopeptide repeat-containing protein, putative... 0.03 Orthogroups_2024-Update

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence
InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_repeat 234 284
IPR002885 Pentatricopeptide_repeat 340 389
IPR002885 Pentatricopeptide_repeat 130 152
IPR002885 Pentatricopeptide_repeat 484 508
IPR002885 Pentatricopeptide_repeat 414 442
IPR002885 Pentatricopeptide_repeat 301 334
IPR002885 Pentatricopeptide_repeat 196 227
No external refs found!