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  5. Sopen00g005290

Sopen00g005290


Description : Reverse transcriptase (RNA-dependent DNA polymerase)


Gene families : OG_42_0000004 (Orthogroups_2024-Update) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Solanum release: Sopen00g005290
Cluster HCCA clusters: Cluster_64

Target Alias Description ECC score Gene Family Method Actions
Cre08.g358542 No alias Function unknown 0.02 Orthogroups_2024-Update
HORVU1Hr1G007530.1 No alias Unknown function 0.02 Orthogroups_2024-Update
HORVU3Hr1G033880.2 No alias Unknown function 0.02 Orthogroups_2024-Update
HORVU4Hr1G045770.1 No alias Unknown function 0.02 Orthogroups_2024-Update
LOC_Os05g29700 No alias retrotransposon, putative, centromere-specific, expressed 0.03 Orthogroups_2024-Update
LOC_Os08g30680 No alias retrotransposon protein, putative, unclassified, expressed 0.03 Orthogroups_2024-Update
LOC_Os10g24400 No alias retrotransposon protein, putative, unclassified, expressed 0.02 Orthogroups_2024-Update
LOC_Os10g27260 No alias transposon protein, putative, CACTA, En/Spm sub-class, expressed 0.02 Orthogroups_2024-Update
PSME_00055810-RA No alias no hits & (original description: no original description) 0.02 Orthogroups_2024-Update
Potri.019G017800 No alias Function unknown 0.02 Orthogroups_2024-Update
Solyc11g063750 No alias No description available 0.02 Orthogroups_2024-Update
Solyc12g038850 No alias No description available 0.03 Orthogroups_2024-Update
Sopen00g001810 No alias Reverse transcriptase (RNA-dependent DNA polymerase) 0.03 Orthogroups_2024-Update
Sopen01g008200 No alias Reverse transcriptase (RNA-dependent DNA polymerase) 0.03 Orthogroups_2024-Update
Sopen02g011110 No alias Reverse transcriptase (RNA-dependent DNA polymerase) 0.03 Orthogroups_2024-Update
Sopen03g021300 No alias hypothetical protein 0.03 Orthogroups_2024-Update
Sopen03g021380 No alias Reverse transcriptase-like 0.05 Orthogroups_2024-Update
Sopen04g009770 No alias Integrase core domain 0.03 Orthogroups_2024-Update
Sopen05g012930 No alias Integrase core domain 0.03 Orthogroups_2024-Update
Sopen05g018490 No alias Reverse transcriptase (RNA-dependent DNA polymerase) 0.03 Orthogroups_2024-Update
Sopen05g023460 No alias Integrase core domain 0.03 Orthogroups_2024-Update
Sopen06g012360 No alias Reverse transcriptase (RNA-dependent DNA polymerase) 0.03 Orthogroups_2024-Update
Sopen06g016840 No alias Reverse transcriptase (RNA-dependent DNA polymerase) 0.03 Orthogroups_2024-Update
Sopen07g006330 No alias Reverse transcriptase (RNA-dependent DNA polymerase) 0.03 Orthogroups_2024-Update
Sopen08g006680 No alias Integrase core domain 0.03 Orthogroups_2024-Update
Sopen08g011030 No alias Reverse transcriptase (RNA-dependent DNA polymerase) 0.03 Orthogroups_2024-Update
Sopen08g014830 No alias Reverse transcriptase (RNA-dependent DNA polymerase) 0.03 Orthogroups_2024-Update
Sopen10g008640 No alias Retrotransposon gag protein 0.03 Orthogroups_2024-Update
Sopen10g015090 No alias Integrase core domain 0.03 Orthogroups_2024-Update
Sopen10g015950 No alias hypothetical protein 0.03 Orthogroups_2024-Update
Sopen11g022280 No alias Reverse transcriptase (RNA-dependent DNA polymerase) 0.04 Orthogroups_2024-Update
Sopen11g022720 No alias Reverse transcriptase (RNA-dependent DNA polymerase) 0.03 Orthogroups_2024-Update
Sopen11g023050 No alias Reverse transcriptase (RNA-dependent DNA polymerase) 0.02 Orthogroups_2024-Update
Sopen11g025830 No alias Retroviral aspartyl protease 0.03 Orthogroups_2024-Update
Sopen12g011680 No alias Reverse transcriptase (RNA-dependent DNA polymerase) 0.03 Orthogroups_2024-Update

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence
InterPro domains Description Start Stop
IPR000477 RT_dom 500 660
No external refs found!