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  5. Solyc01g104070

Solyc01g104070


Description : ARM repeat superfamily protein (AHRD V3.3 *** AT4G27640.1)


Gene families : OG_42_0006407 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0006407_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Solanum release: Solyc01g104070
Cluster HCCA clusters: Cluster_102

Target Alias Description ECC score Gene Family Method Actions
A4A49_10694 No alias hypothetical protein 0.03 Orthogroups_2024-Update
Bradi1g67430 No alias ARM repeat superfamily protein 0.02 Orthogroups_2024-Update
Brara.A01736.1 No alias nucleocytoplasmic import karyopherin *(IMB4) 0.08 Orthogroups_2024-Update
Brara.K00077.1 No alias nucleocytoplasmic import karyopherin *(IMB4) 0.03 Orthogroups_2024-Update
Cre12.g490850 No alias ARM repeat superfamily protein 0.03 Orthogroups_2024-Update
Glyma.08G187000 No alias ARM repeat superfamily protein 0.03 Orthogroups_2024-Update
LOC_Os03g15540 No alias HEAT repeat family protein, putative, expressed 0.03 Orthogroups_2024-Update
Potri.010G169800 No alias ARM repeat superfamily protein 0.05 Orthogroups_2024-Update
Pp1s143_122V6 No alias T29A15.130; importin beta-2 subunit family protein... 0.02 Orthogroups_2024-Update
Sopen01g046480 No alias HEAT repeat 0.12 Orthogroups_2024-Update
evm.model.tig00000237.33 No alias (at4g27640 : 502.0) ARM repeat superfamily protein;... 0.02 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0005515 protein binding IEA InterProScan predictions
BP GO:0006886 intracellular protein transport IEA InterProScan predictions
MF GO:0008536 Ran GTPase binding IEA InterProScan predictions
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Type GO Term Name Evidence Source
BP GO:0001522 pseudouridine synthesis IEP Predicted GO
MF GO:0003723 RNA binding IEP Predicted GO
MF GO:0003735 structural constituent of ribosome IEP Predicted GO
MF GO:0005198 structural molecule activity IEP Predicted GO
CC GO:0005840 ribosome IEP Predicted GO
BP GO:0006364 rRNA processing IEP Predicted GO
BP GO:0006396 RNA processing IEP Predicted GO
BP GO:0006412 translation IEP Predicted GO
BP GO:0006518 peptide metabolic process IEP Predicted GO
BP GO:0009058 biosynthetic process IEP Predicted GO
BP GO:0009059 macromolecule biosynthetic process IEP Predicted GO
BP GO:0016070 RNA metabolic process IEP Predicted GO
BP GO:0016072 rRNA metabolic process IEP Predicted GO
MF GO:0019843 rRNA binding IEP Predicted GO
BP GO:0022613 ribonucleoprotein complex biogenesis IEP Predicted GO
CC GO:0032991 protein-containing complex IEP Predicted GO
BP GO:0034641 cellular nitrogen compound metabolic process IEP Predicted GO
BP GO:0034645 cellular macromolecule biosynthetic process IEP Predicted GO
BP GO:0042254 ribosome biogenesis IEP Predicted GO
BP GO:0043043 peptide biosynthetic process IEP Predicted GO
BP GO:0043170 macromolecule metabolic process IEP Predicted GO
CC GO:0043226 organelle IEP Predicted GO
CC GO:0043228 non-membrane-bounded organelle IEP Predicted GO
CC GO:0043229 intracellular organelle IEP Predicted GO
CC GO:0043232 intracellular non-membrane-bounded organelle IEP Predicted GO
BP GO:0043603 cellular amide metabolic process IEP Predicted GO
BP GO:0043604 amide biosynthetic process IEP Predicted GO
BP GO:0044085 cellular component biogenesis IEP Predicted GO
BP GO:0044249 cellular biosynthetic process IEP Predicted GO
BP GO:0044271 cellular nitrogen compound biosynthetic process IEP Predicted GO
CC GO:0044424 intracellular part IEP Predicted GO
CC GO:0044444 cytoplasmic part IEP Predicted GO
BP GO:1901566 organonitrogen compound biosynthetic process IEP Predicted GO
BP GO:1901576 organic substance biosynthetic process IEP Predicted GO
CC GO:1990904 ribonucleoprotein complex IEP Predicted GO
InterPro domains Description Start Stop
IPR001494 Importin-beta_N 23 87
IPR000357 HEAT 379 409
IPR000357 HEAT 160 190
No external refs found!