1. Home
  2. Species
  3. Solanum pennellii
  4. Sequence
  5. Sopen00g009510

Sopen00g009510


Description : gag-polypeptide of LTR copia-type


Gene families : OG_42_0001783 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0001783_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Solanum release: Sopen00g009510
Cluster HCCA clusters: Cluster_34

Target Alias Description ECC score Gene Family Method Actions
Sopen03g007400 No alias Reverse transcriptase (RNA-dependent DNA polymerase) 0.03 Orthogroups_2024-Update
Sopen04g022000 No alias Reverse transcriptase (RNA-dependent DNA polymerase) 0.03 Orthogroups_2024-Update
Sopen04g028260 No alias Reverse transcriptase (RNA-dependent DNA polymerase) 0.02 Orthogroups_2024-Update
Sopen06g008220 No alias gag-polypeptide of LTR copia-type 0.03 Orthogroups_2024-Update

Type GO Term Name Evidence Source

No GO annotation available for this sequence
Toggle parental
Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence
InterPro domains Description Start Stop
IPR005162 Retrotrans_gag_dom 72 156
IPR025724 GAG-pre-integrase_dom 471 544
IPR029472 Copia-like_N 16 58
No external refs found!