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  5. Solyc01g104500

Solyc01g104500


Description : zinc finger/BTB domain protein, putative (DUF1644) (AHRD V3.3 *** AT1G68140.2)


Gene families : OG_42_0000519 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000519_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Solanum release: Solyc01g104500
Cluster HCCA clusters: Cluster_190

Target Alias Description ECC score Gene Family Method Actions
A4A49_27677 No alias hypothetical protein 0.03 Orthogroups_2024-Update
At3g25910 No alias AT3g25910/MPE11_6 [Source:UniProtKB/TrEMBL;Acc:Q9LUA0] 0.03 Orthogroups_2024-Update
Brara.B02293.1 No alias Unknown function 0.03 Orthogroups_2024-Update
Brara.F03305.1 No alias Unknown function 0.03 Orthogroups_2024-Update
GRMZM2G034573 No alias Protein of unknown function (DUF1644) 0.03 Orthogroups_2024-Update
Glyma.08G114600 No alias Protein of unknown function (DUF1644) 0.02 Orthogroups_2024-Update
HORVU2Hr1G078630.2 No alias Unknown function 0.02 Orthogroups_2024-Update
LOC_Os02g05710 No alias expressed protein 0.03 Orthogroups_2024-Update
LOC_Os02g35840 No alias expressed protein 0.04 Orthogroups_2024-Update
Potri.002G088700 No alias Protein of unknown function (DUF1644) 0.02 Orthogroups_2024-Update
Potri.003G021800 No alias Protein of unknown function (DUF1644) 0.03 Orthogroups_2024-Update
Potri.006G275400 No alias Protein of unknown function (DUF1644) 0.03 Orthogroups_2024-Update
Pp1s53_148V6 No alias K7P8.3; expressed protein [Arabidopsis thaliana] 0.01 Orthogroups_2024-Update
Solyc09g061750 No alias Cellulose synthase 2 (AHRD V3.3 *** A0A0B0N012_GOSAR) 0.03 Orthogroups_2024-Update
Sopen01g047000 No alias Protein of unknown function (DUF1644) 0.06 Orthogroups_2024-Update
Sopen06g025250 No alias Protein of unknown function (DUF1644) 0.04 Orthogroups_2024-Update
Sopen09g024730 No alias Protein of unknown function (DUF1644) 0.03 Orthogroups_2024-Update

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0000155 phosphorelay sensor kinase activity IEP Predicted GO
MF GO:0000175 3'-5'-exoribonuclease activity IEP Predicted GO
BP GO:0000289 nuclear-transcribed mRNA poly(A) tail shortening IEP Predicted GO
BP GO:0000956 nuclear-transcribed mRNA catabolic process IEP Predicted GO
MF GO:0003674 molecular_function IEP Predicted GO
MF GO:0003676 nucleic acid binding IEP Predicted GO
MF GO:0003729 mRNA binding IEP Predicted GO
MF GO:0004045 aminoacyl-tRNA hydrolase activity IEP Predicted GO
MF GO:0004518 nuclease activity IEP Predicted GO
MF GO:0004527 exonuclease activity IEP Predicted GO
MF GO:0004532 exoribonuclease activity IEP Predicted GO
MF GO:0004535 poly(A)-specific ribonuclease activity IEP Predicted GO
MF GO:0004672 protein kinase activity IEP Predicted GO
MF GO:0004673 protein histidine kinase activity IEP Predicted GO
MF GO:0004888 transmembrane signaling receptor activity IEP Predicted GO
MF GO:0004970 ionotropic glutamate receptor activity IEP Predicted GO
MF GO:0005230 extracellular ligand-gated ion channel activity IEP Predicted GO
MF GO:0005488 binding IEP Predicted GO
MF GO:0005515 protein binding IEP Predicted GO
CC GO:0005672 transcription factor TFIIA complex IEP Predicted GO
CC GO:0005685 U1 snRNP IEP Predicted GO
CC GO:0005741 mitochondrial outer membrane IEP Predicted GO
BP GO:0006367 transcription initiation from RNA polymerase II promoter IEP Predicted GO
BP GO:0006376 mRNA splice site selection IEP Predicted GO
BP GO:0006402 mRNA catabolic process IEP Predicted GO
MF GO:0008066 glutamate receptor activity IEP Predicted GO
MF GO:0008270 zinc ion binding IEP Predicted GO
BP GO:0009057 macromolecule catabolic process IEP Predicted GO
MF GO:0015276 ligand-gated ion channel activity IEP Predicted GO
MF GO:0016775 phosphotransferase activity, nitrogenous group as acceptor IEP Predicted GO
MF GO:0016796 exonuclease activity, active with either ribo- or deoxyribonucleic acids and producing 5'-phosphomonoesters IEP Predicted GO
MF GO:0016896 exoribonuclease activity, producing 5'-phosphomonoesters IEP Predicted GO
CC GO:0019867 outer membrane IEP Predicted GO
BP GO:0022618 ribonucleoprotein complex assembly IEP Predicted GO
MF GO:0022824 transmitter-gated ion channel activity IEP Predicted GO
MF GO:0022834 ligand-gated channel activity IEP Predicted GO
MF GO:0022835 transmitter-gated channel activity IEP Predicted GO
CC GO:0030532 small nuclear ribonucleoprotein complex IEP Predicted GO
MF GO:0030594 neurotransmitter receptor activity IEP Predicted GO
CC GO:0031011 Ino80 complex IEP Predicted GO
CC GO:0031968 organelle outer membrane IEP Predicted GO
CC GO:0033202 DNA helicase complex IEP Predicted GO
MF GO:0038023 signaling receptor activity IEP Predicted GO
MF GO:0043169 cation binding IEP Predicted GO
BP GO:0044265 cellular macromolecule catabolic process IEP Predicted GO
CC GO:0044422 organelle part IEP Predicted GO
CC GO:0044428 nuclear part IEP Predicted GO
CC GO:0044446 intracellular organelle part IEP Predicted GO
CC GO:0044454 nuclear chromosome part IEP Predicted GO
CC GO:0044798 nuclear transcription factor complex IEP Predicted GO
MF GO:0046872 metal ion binding IEP Predicted GO
MF GO:0060089 molecular transducer activity IEP Predicted GO
CC GO:0070603 SWI/SNF superfamily-type complex IEP Predicted GO
BP GO:0071826 ribonucleoprotein complex subunit organization IEP Predicted GO
CC GO:0090575 RNA polymerase II transcription factor complex IEP Predicted GO
MF GO:0097159 organic cyclic compound binding IEP Predicted GO
CC GO:0097346 INO80-type complex IEP Predicted GO
CC GO:0097525 spliceosomal snRNP complex IEP Predicted GO
CC GO:0098805 whole membrane IEP Predicted GO
CC GO:0120114 Sm-like protein family complex IEP Predicted GO
MF GO:1901363 heterocyclic compound binding IEP Predicted GO
CC GO:1904949 ATPase complex IEP Predicted GO
InterPro domains Description Start Stop
IPR012866 DUF1644 110 161
IPR012866 DUF1644 47 99
No external refs found!