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  5. Sopen01g001040

Sopen01g001040


Description : Zinc finger, C2H2 type


Gene families : OG_42_0000119 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000119_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Solanum release: Sopen01g001040
Cluster HCCA clusters: Cluster_368

Target Alias Description ECC score Gene Family Method Actions
Bradi3g44520 No alias indeterminate(ID)-domain 2 0.04 Orthogroups_2024-Update
Brara.J00213.1 No alias C2H2 subclass IDD transcription factor 0.02 Orthogroups_2024-Update
GRMZM2G320287 No alias indeterminate(ID)-domain 2 0.02 Orthogroups_2024-Update
Glyma.04G033300 No alias C2H2-like zinc finger protein 0.03 Orthogroups_2024-Update
Glyma.08G192300 No alias indeterminate(ID)-domain 11 0.03 Orthogroups_2024-Update
Glyma.10G206600 No alias indeterminate(ID)-domain 4 0.02 Orthogroups_2024-Update
LOC_Os01g09850 No alias ZOS1-04 - C2H2 zinc finger protein, expressed 0.02 Orthogroups_2024-Update
LOC_Os07g39310 No alias ZOS7-06 - C2H2 zinc finger protein, expressed 0.02 Orthogroups_2024-Update
Potri.005G027200 No alias indeterminate(ID)-domain 2 0.03 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEA InterProScan predictions
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Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence
InterPro domains Description Start Stop
IPR013087 Znf_C2H2_type 48 70
No external refs found!