Sopen01g001560

Description : tRNA synthetases class II (D, K and N)

Gene families : OG_42_0007215 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0007215_tree

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	Solanum release: Sopen01g001560
Cluster	HCCA clusters: Cluster_57

Target	Alias	Description	ECC score	Gene Family Method
79851	No alias	Lysyl-tRNA synthetase, class II	0.04	Orthogroups_2024-Update
Bradi3g49150	No alias	Lysyl-tRNA synthetase, class II	0.05	Orthogroups_2024-Update
Brara.E02768.1	No alias	lysine-tRNA ligase	0.03	Orthogroups_2024-Update
Kfl00593_0030	kfl00593_0030_v1.1	(at3g13490 : 625.0) Encodes a dual targeted lysyl-tRNA...	0.02	Orthogroups_2024-Update
LOC_Os02g41470	No alias	tRNA synthetases class II domain containing protein, expressed	0.02	Orthogroups_2024-Update
Potri.003G221600	No alias	Lysyl-tRNA synthetase, class II	0.05	Orthogroups_2024-Update
Seita.9G164300.1	No alias	lysine-tRNA ligase	0.02	Orthogroups_2024-Update
Solyc01g005540	No alias	Lysine--tRNA ligase (AHRD V3.3 *** K4ASC0_SOLLC)	0.11	Orthogroups_2024-Update
evm.model.contig_643.3	No alias	(at3g13490 : 531.0) Encodes a dual targeted lysyl-tRNA...	0.01	Orthogroups_2024-Update

Type	GO Term	Name	Evidence	Source
MF	GO:0000166	nucleotide binding	IEA	InterProScan predictions
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	IEA	InterProScan predictions
MF	GO:0003824	catalytic activity	None	Extended
MF	GO:0004812	aminoacyl-tRNA ligase activity	IEA	InterProScan predictions
MF	GO:0005488	binding	None	Extended
MF	GO:0005524	ATP binding	IEA	InterProScan predictions
BP	GO:0006082	organic acid metabolic process	None	Extended
BP	GO:0006139	nucleobase-containing compound metabolic process	None	Extended
BP	GO:0006399	tRNA metabolic process	None	Extended
BP	GO:0006418	tRNA aminoacylation for protein translation	IEA	InterProScan predictions
BP	GO:0006520	cellular amino acid metabolic process	None	Extended
BP	GO:0006725	cellular aromatic compound metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
MF	GO:0008144	drug binding	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0016070	RNA metabolic process	None	Extended
MF	GO:0016874	ligase activity	None	Extended
MF	GO:0016875	ligase activity, forming carbon-oxygen bonds	None	Extended
MF	GO:0017076	purine nucleotide binding	None	Extended
BP	GO:0019752	carboxylic acid metabolic process	None	Extended
MF	GO:0030554	adenyl nucleotide binding	None	Extended
MF	GO:0032553	ribonucleotide binding	None	Extended
MF	GO:0032555	purine ribonucleotide binding	None	Extended
MF	GO:0032559	adenyl ribonucleotide binding	None	Extended
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
BP	GO:0034660	ncRNA metabolic process	None	Extended
MF	GO:0035639	purine ribonucleoside triphosphate binding	None	Extended
MF	GO:0036094	small molecule binding	None	Extended
BP	GO:0043038	amino acid activation	None	Extended
BP	GO:0043039	tRNA aminoacylation	None	Extended
MF	GO:0043167	ion binding	None	Extended
MF	GO:0043168	anion binding	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
BP	GO:0043436	oxoacid metabolic process	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0044281	small molecule metabolic process	None	Extended
BP	GO:0046483	heterocycle metabolic process	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
BP	GO:0090304	nucleic acid metabolic process	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
MF	GO:0097367	carbohydrate derivative binding	None	Extended
MF	GO:0140098	catalytic activity, acting on RNA	None	Extended
MF	GO:0140101	catalytic activity, acting on a tRNA	None	Extended
MF	GO:1901265	nucleoside phosphate binding	None	Extended
BP	GO:1901360	organic cyclic compound metabolic process	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended
BP	GO:1901564	organonitrogen compound metabolic process	None	Extended

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Type	GO Term	Name	Evidence	Source
No Predicted GO terms available for this sequence

InterPro domains	Description	Start	Stop
IPR004365	NA-bd_OB_tRNA	119	197
IPR004364	aa-tRNA-synt_II	215	582

External Links

No external refs found!

Sopen01g001560

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation