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  5. Sopen01g001870

Sopen01g001870


Description : Leucine rich repeat


Gene families : OG_42_0000110 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000110_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Solanum release: Sopen01g001870
Cluster HCCA clusters: Cluster_130

Target Alias Description ECC score Gene Family Method Actions
Brara.D00691.1 No alias Unknown function 0.02 Orthogroups_2024-Update
GRMZM2G062576 No alias receptor like protein 7 0.02 Orthogroups_2024-Update
Glyma.14G046000 No alias receptor like protein 33 0.04 Orthogroups_2024-Update
LOC_Os01g06900 No alias verticillium wilt disease resistance protein Ve2,... 0.03 Orthogroups_2024-Update
LOC_Os12g12130 No alias verticillium wilt disease resistance protein, putative, expressed 0.03 Orthogroups_2024-Update
Potri.012G005700 No alias receptor like protein 27 0.04 Orthogroups_2024-Update
Potri.012G025100 No alias receptor like protein 6 0.04 Orthogroups_2024-Update
Potri.T163500 No alias receptor like protein 12 0.03 Orthogroups_2024-Update
Seita.6G071200.1 No alias Unknown function 0.04 Orthogroups_2024-Update
Sobic.008G075500.1 No alias Unknown function 0.02 Orthogroups_2024-Update
Solyc01g009690 No alias BnaC05g27570D protein (AHRD V3.3 --* A0A078CAX2_BRANA) 0.03 Orthogroups_2024-Update
Solyc12g013740 No alias Leucine-rich repeat receptor-like protein kinase family... 0.02 Orthogroups_2024-Update
Solyc12g099980 No alias Leucine-rich repeat receptor-like protein kinase family... 0.03 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0005515 protein binding IEA InterProScan predictions
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Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence
InterPro domains Description Start Stop
IPR013210 LRR_N_plant-typ 30 78
IPR001611 Leu-rich_rpt 108 121
IPR001611 Leu-rich_rpt 134 156
IPR001611 Leu-rich_rpt 664 719
IPR001611 Leu-rich_rpt 259 317
IPR001611 Leu-rich_rpt 355 412
IPR001611 Leu-rich_rpt 522 580
No external refs found!