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  5. Sopen01g001970

Sopen01g001970


Description : DEAD/DEAH box helicase


Gene families : OG_42_0001585 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0001585_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Solanum release: Sopen01g001970
Cluster HCCA clusters: Cluster_306

Target Alias Description ECC score Gene Family Method Actions
A4A49_20362 No alias dead-box atp-dependent rna helicase 37 0.04 Orthogroups_2024-Update
Brara.G01802.1 No alias sRNA cargo-loading helicase *(RH11/37) of extracellular... 0.03 Orthogroups_2024-Update
GRMZM2G403636 No alias P-loop containing nucleoside triphosphate hydrolases... 0.04 Orthogroups_2024-Update
PSME_00034692-RA No alias (at2g42520 : 731.0) P-loop containing nucleoside... 0.02 Orthogroups_2024-Update
Potri.001G007900 No alias P-loop containing nucleoside triphosphate hydrolases... 0.03 Orthogroups_2024-Update
Potri.003G217800 No alias P-loop containing nucleoside triphosphate hydrolases... 0.02 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEA InterProScan predictions
MF GO:0005524 ATP binding IEA InterProScan predictions
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Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence
InterPro domains Description Start Stop
IPR001650 Helicase_C 382 497
IPR011545 DEAD/DEAH_box_helicase_dom 168 347
No external refs found!