1. Home
  2. Species
  3. Solanum pennellii
  4. Sequence
  5. Sopen01g002100

Sopen01g002100


Description : C-5 cytosine-specific DNA methylase


Gene families : OG_42_0002722 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0002722_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Solanum release: Sopen01g002100
Cluster HCCA clusters: Cluster_44

Target Alias Description ECC score Gene Family Method Actions
At1g69770 No alias DNA (cytosine-5)-methyltransferase CMT3... 0.04 Orthogroups_2024-Update
Glyma.01G160300 No alias chromomethylase 1 0.02 Orthogroups_2024-Update
Kfl00108_0130 kfl00108_0130_v1.1 (q8lpu5|cmt3_maize : 469.0) DNA... 0.02 Orthogroups_2024-Update
LOC_Os03g12570 No alias expressed protein 0.02 Orthogroups_2024-Update
Seita.9G300300.1 No alias DNA chromomethylase *(CMT) 0.04 Orthogroups_2024-Update
Sobic.006G214000.1 No alias DNA chromomethylase *(CMT) 0.05 Orthogroups_2024-Update
Solyc01g006100 No alias cytosine-5 DNA methyltransferase1L 0.06 Orthogroups_2024-Update
Solyc12g100330 No alias cytosine-5 DNA methyltransferase3L 0.05 Orthogroups_2024-Update
Sopen12g034960 No alias C-5 cytosine-specific DNA methylase 0.03 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0003682 chromatin binding IEA InterProScan predictions
MF GO:0008168 methyltransferase activity IEA InterProScan predictions
Toggle parental
Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence
InterPro domains Description Start Stop
IPR023780 Chromo_domain 405 459
IPR001525 C5_MeTfrase 469 819
IPR001025 BAH_dom 141 248
No external refs found!