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  5. Sopen01g002840

Sopen01g002840


Description : PPR repeat family


Gene families : OG_42_0009808 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0009808_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Solanum release: Sopen01g002840
Cluster HCCA clusters: Cluster_107

Target Alias Description ECC score Gene Family Method Actions
Bradi4g07790 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.03 Orthogroups_2024-Update
Potri.006G200800 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.03 Orthogroups_2024-Update
Sobic.004G256900.1 No alias Unknown function 0.03 Orthogroups_2024-Update
Solyc01g006850 No alias Pentatricopeptide repeat-containing family protein (AHRD... 0.05 Orthogroups_2024-Update

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence
InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_repeat 461 487
IPR002885 Pentatricopeptide_repeat 1022 1051
IPR002885 Pentatricopeptide_repeat 251 280
IPR002885 Pentatricopeptide_repeat 917 946
IPR002885 Pentatricopeptide_repeat 882 906
IPR002885 Pentatricopeptide_repeat 391 419
IPR002885 Pentatricopeptide_repeat 426 454
IPR002885 Pentatricopeptide_repeat 282 331
IPR002885 Pentatricopeptide_repeat 492 537
IPR002885 Pentatricopeptide_repeat 948 995
IPR002885 Pentatricopeptide_repeat 774 821
No external refs found!