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  5. Sopen01g002900

Sopen01g002900


Description : Ring finger domain


Gene families : OG_42_0000003 (Orthogroups_2024-Update) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Solanum release: Sopen01g002900
Cluster HCCA clusters: Cluster_401

Target Alias Description ECC score Gene Family Method Actions
A4A49_37314 No alias e3 ubiquitin-protein ligase atl9 0.03 Orthogroups_2024-Update
At1g72220 No alias RING-H2 finger protein ATL54... 0.03 Orthogroups_2024-Update
At4g35480 No alias RHA3B [Source:UniProtKB/TrEMBL;Acc:A0A178UXS9] 0.02 Orthogroups_2024-Update
Brara.B02007.1 No alias RING-H2-class ATL-subclass E3 ubiquitin ligase 0.02 Orthogroups_2024-Update
Brara.K00768.1 No alias RING-H2-class ATL-subclass E3 ubiquitin ligase 0.04 Orthogroups_2024-Update
GRMZM2G145382 No alias RING/U-box superfamily protein 0.03 Orthogroups_2024-Update
GRMZM2G467187 No alias RING/U-box superfamily protein 0.02 Orthogroups_2024-Update
Glyma.07G245400 No alias TOXICOS EN LEVADURA 2 0.03 Orthogroups_2024-Update
HORVU5Hr1G069990.3 No alias RING-H2-class ATL-subclass E3 ubiquitin ligase 0.02 Orthogroups_2024-Update
LOC_Os12g02220 No alias zinc finger, C3HC4 type domain containing protein, expressed 0.04 Orthogroups_2024-Update
MA_10432957g0010 No alias no hits & (original description: no original description) 0.05 Orthogroups_2024-Update
Potri.009G073900 No alias TOXICOS EN LEVADURA 2 0.03 Orthogroups_2024-Update
Pp1s102_105V6 No alias ring finger 0.02 Orthogroups_2024-Update
Seita.1G203900.1 No alias RING-H2-class ATL-subclass E3 ubiquitin ligase 0.04 Orthogroups_2024-Update
Seita.1G270700.1 No alias RING-H2-class ATL-subclass E3 ubiquitin ligase 0.03 Orthogroups_2024-Update
Sobic.005G226700.1 No alias Unknown function 0.02 Orthogroups_2024-Update
Solyc02g086950 No alias LOW QUALITY:RING/U-box superfamily protein, putative... 0.04 Orthogroups_2024-Update
Solyc11g073170 No alias LOW QUALITY:RING/U-box superfamily protein, putative... 0.03 Orthogroups_2024-Update

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence
InterPro domains Description Start Stop
IPR001841 Znf_RING 116 159
No external refs found!