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  5. Sopen01g002960

Sopen01g002960


Description : Helicase associated domain (HA2)


Gene families : OG_42_0000651 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000651_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Solanum release: Sopen01g002960
Cluster HCCA clusters: Cluster_286

Target Alias Description ECC score Gene Family Method Actions
Bradi5g10330 No alias RNA helicase family protein 0.04 Orthogroups_2024-Update
Brara.F03504.1 No alias Unknown function 0.02 Orthogroups_2024-Update
Glyma.02G195500 No alias RNA helicase family protein 0.03 Orthogroups_2024-Update
Glyma.15G216000 No alias DEA(D/H)-box RNA helicase family protein 0.03 Orthogroups_2024-Update
Kfl00858_0010 kfl00858_0010_v1.1 (at2g35920 : 310.0) RNA helicase family protein;... 0.02 Orthogroups_2024-Update
evm.model.tig00000786.1 No alias (at1g48650 : 432.0) DEA(D/H)-box RNA helicase family... 0.01 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEA InterProScan predictions
MF GO:0004386 helicase activity IEA InterProScan predictions
MF GO:0005524 ATP binding IEA InterProScan predictions
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Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence
InterPro domains Description Start Stop
IPR011545 DEAD/DEAH_box_helicase_dom 267 422
IPR007502 Helicase-assoc_dom 719 806
IPR011709 DUF1605 878 958
IPR001650 Helicase_C 530 655
No external refs found!