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  5. Sopen01g003240

Sopen01g003240


Description : Brix domain


Gene families : OG_42_0005915 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0005915_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Solanum release: Sopen01g003240
Cluster HCCA clusters: Cluster_164

Target Alias Description ECC score Gene Family Method Actions
145922 No alias Ribosomal RNA processing Brix domain protein 0.02 Orthogroups_2024-Update
At1g63780 No alias IMP4 [Source:UniProtKB/TrEMBL;Acc:A0A178WDJ3] 0.03 Orthogroups_2024-Update
Brara.I01380.1 No alias SSU processome assembly factor *(IMP4) 0.06 Orthogroups_2024-Update
Cre10.g454100 No alias Ribosomal RNA processing Brix domain protein 0.06 Orthogroups_2024-Update
Glyma.04G139900 No alias Ribosomal RNA processing Brix domain protein 0.07 Orthogroups_2024-Update
Glyma.11G152600 No alias Ribosomal RNA processing Brix domain protein 0.03 Orthogroups_2024-Update
HORVU7Hr1G071450.1 No alias SSU processome assembly factor *(IMP4) 0.03 Orthogroups_2024-Update
LOC_Os08g05880 No alias Brix domain containing protein, putative, expressed 0.02 Orthogroups_2024-Update
Potri.003G201100 No alias Ribosomal RNA processing Brix domain protein 0.05 Orthogroups_2024-Update
Pp1s340_22V6 No alias T12P18.20; brix domain-containing protein [Arabidopsis thaliana] 0.03 Orthogroups_2024-Update
Seita.6G058500.1 No alias SSU processome assembly factor *(IMP4) 0.05 Orthogroups_2024-Update
Sobic.010G247400.1 No alias SSU processome assembly factor *(IMP4) 0.07 Orthogroups_2024-Update
Solyc01g007250 No alias U3 small nucleolar ribonucleoprotein protein imp4,... 0.12 Orthogroups_2024-Update
evm.model.contig_2299.1 No alias (at1g63780 : 325.0) Small nucleolar ribonucleoprotein... 0.02 Orthogroups_2024-Update
evm.model.tig00020848.22 No alias (at1g63780 : 310.0) Small nucleolar ribonucleoprotein... 0.02 Orthogroups_2024-Update

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence
InterPro domains Description Start Stop
IPR007109 Brix 90 260
No external refs found!