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  5. Sopen01g003530

Sopen01g003530


Description : Reverse transcriptase (RNA-dependent DNA polymerase)


Gene families : OG_42_0000008 (Orthogroups_2024-Update) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Solanum release: Sopen01g003530
Cluster HCCA clusters: Cluster_358

Target Alias Description ECC score Gene Family Method Actions
Cre03.g183950 No alias cysteine-rich RLK (RECEPTOR-like protein kinase) 8 0.02 Orthogroups_2024-Update
Solyc04g011970 No alias No description available 0.02 Orthogroups_2024-Update
Sopen00g011290 No alias gag-polypeptide of LTR copia-type 0.03 Orthogroups_2024-Update
Sopen01g011350 No alias Domain of unknown function (DUF4219) 0.03 Orthogroups_2024-Update
Sopen01g025970 No alias Reverse transcriptase (RNA-dependent DNA polymerase) 0.05 Orthogroups_2024-Update
Sopen01g027290 No alias Reverse transcriptase (RNA-dependent DNA polymerase) 0.02 Orthogroups_2024-Update
Sopen01g027300 No alias Integrase core domain 0.05 Orthogroups_2024-Update
Sopen02g009570 No alias Reverse transcriptase (RNA-dependent DNA polymerase) 0.02 Orthogroups_2024-Update
Sopen04g013470 No alias Reverse transcriptase (RNA-dependent DNA polymerase) 0.03 Orthogroups_2024-Update
Sopen05g007000 No alias Reverse transcriptase (RNA-dependent DNA polymerase) 0.02 Orthogroups_2024-Update
Sopen05g024300 No alias Reverse transcriptase (RNA-dependent DNA polymerase) 0.03 Orthogroups_2024-Update
Sopen06g008980 No alias Reverse transcriptase (RNA-dependent DNA polymerase) 0.03 Orthogroups_2024-Update
Sopen06g009400 No alias Reverse transcriptase (RNA-dependent DNA polymerase) 0.03 Orthogroups_2024-Update
Sopen07g023540 No alias Reverse transcriptase (RNA-dependent DNA polymerase) 0.03 Orthogroups_2024-Update
Sopen09g024390 No alias Reverse transcriptase (RNA-dependent DNA polymerase) 0.04 Orthogroups_2024-Update
Sopen09g024800 No alias Reverse transcriptase (RNA-dependent DNA polymerase) 0.05 Orthogroups_2024-Update
Sopen10g007390 No alias Reverse transcriptase (RNA-dependent DNA polymerase) 0.02 Orthogroups_2024-Update
Sopen10g024120 No alias Reverse transcriptase (RNA-dependent DNA polymerase) 0.03 Orthogroups_2024-Update
Sopen11g013320 No alias Reverse transcriptase (RNA-dependent DNA polymerase) 0.03 Orthogroups_2024-Update
Sopen11g014180 No alias Reverse transcriptase (RNA-dependent DNA polymerase) 0.04 Orthogroups_2024-Update
Sopen11g018860 No alias gag-polypeptide of LTR copia-type 0.03 Orthogroups_2024-Update
Sopen12g019360 No alias gag-polypeptide of LTR copia-type 0.03 Orthogroups_2024-Update
Sopen12g022840 No alias Reverse transcriptase (RNA-dependent DNA polymerase) 0.03 Orthogroups_2024-Update
Sopen12g024140 No alias hypothetical protein 0.03 Orthogroups_2024-Update
Sopen12g024470 No alias Domain of unknown function (DUF4219) 0.02 Orthogroups_2024-Update
Sopen12g027910 No alias Reverse transcriptase (RNA-dependent DNA polymerase) 0.03 Orthogroups_2024-Update

Type GO Term Name Evidence Source
BP GO:0015074 DNA integration IEA InterProScan predictions
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Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence
InterPro domains Description Start Stop
IPR025724 GAG-pre-integrase_dom 554 617
IPR001584 Integrase_cat-core 631 744
IPR013103 RVT_2 1035 1275
No external refs found!