Sopen01g004120

Description : RNA recognition motif (a.k.a. RRM, RBD, or RNP domain)

Gene families : OG_42_0001611 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0001611_tree

Sequence : coding (download), protein (download)

Attention: This gene has low abundance.

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	Solanum release: Sopen01g004120
Cluster	HCCA clusters: Cluster_313

Target	Alias	Description	ECC score	Gene Family Method	Actions
Sopen01g034970	No alias	Zinc finger C-x8-C-x5-C-x3-H type (and similar)	0.03	Orthogroups_2024-Update
Sopen05g014890	No alias	RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)	0.04	Orthogroups_2024-Update

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	IEA	InterProScan predictions
MF	GO:0005488	binding	None	Extended
MF	GO:0043167	ion binding	None	Extended
MF	GO:0043169	cation binding	None	Extended
MF	GO:0046872	metal ion binding	IEA	InterProScan predictions
MF	GO:0097159	organic cyclic compound binding	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended

Type	GO Term	Name	Evidence	Source
No Predicted GO terms available for this sequence

InterPro domains	Description	Start	Stop
IPR000504	RRM_dom	326	373
IPR000571	Znf_CCCH	195	216

External Links

No external refs found!