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evm.model.contig_2020.27


Description : (at1g28490 : 125.0) Encodes one of 24 Arabidopsis syntaxins. Its mRNA has been shown to be expressed.; syntaxin of plants 61 (SYP61); CONTAINS InterPro DOMAIN/s: Target SNARE coiled-coil domain (InterPro:IPR000727), t-SNARE (InterPro:IPR010989), Syntaxin/epimorphin, conserved site (InterPro:IPR006012), Syntaxin 6, N-terminal (InterPro:IPR015260); BEST Arabidopsis thaliana protein match is: syntaxin of plants 52 (TAIR:AT1G79590.2); Has 786 Blast hits to 786 proteins in 195 species: Archae - 0; Bacteria - 4; Metazoa - 244; Fungi - 238; Plants - 166; Viruses - 0; Other Eukaryotes - 134 (source: NCBI BLink). & (reliability: 250.0) & (original description: no original description)


Gene families : OG_42_0003206 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0003206_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Porphyridium release: evm.model.contig_2020.27
Cluster HCCA clusters: Cluster_15

Target Alias Description ECC score Gene Family Method Actions
Potri.011G059700 No alias syntaxin of plants 61 0.02 Orthogroups_2024-Update
evm.model.tig00000571.43 No alias (at1g28490 : 106.0) Encodes one of 24 Arabidopsis... 0.02 Orthogroups_2024-Update

Type GO Term Name Evidence Source
CC GO:0016020 membrane IEA InterProScan predictions
BP GO:0048193 Golgi vesicle transport IEA InterProScan predictions
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Type GO Term Name Evidence Source
MF GO:0004180 carboxypeptidase activity IEP Predicted GO
MF GO:0004181 metallocarboxypeptidase activity IEP Predicted GO
MF GO:0004615 phosphomannomutase activity IEP Predicted GO
MF GO:0004620 phospholipase activity IEP Predicted GO
MF GO:0004623 phospholipase A2 activity IEP Predicted GO
CC GO:0005576 extracellular region IEP Predicted GO
BP GO:0007275 multicellular organism development IEP Predicted GO
MF GO:0008235 metalloexopeptidase activity IEP Predicted GO
BP GO:0009225 nucleotide-sugar metabolic process IEP Predicted GO
BP GO:0009226 nucleotide-sugar biosynthetic process IEP Predicted GO
BP GO:0009298 GDP-mannose biosynthetic process IEP Predicted GO
MF GO:0016298 lipase activity IEP Predicted GO
BP GO:0019673 GDP-mannose metabolic process IEP Predicted GO
CC GO:0030014 CCR4-NOT complex IEP Predicted GO
BP GO:0031123 RNA 3'-end processing IEP Predicted GO
BP GO:0031124 mRNA 3'-end processing IEP Predicted GO
BP GO:0032501 multicellular organismal process IEP Predicted GO
BP GO:0032502 developmental process IEP Predicted GO
BP GO:0048856 anatomical structure development IEP Predicted GO
BP GO:0051056 regulation of small GTPase mediated signal transduction IEP Predicted GO
BP GO:1902531 regulation of intracellular signal transduction IEP Predicted GO
InterPro domains Description Start Stop
IPR015260 Syntaxin-6_N 6 105
IPR000727 T_SNARE_dom 214 264
No external refs found!