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  5. evm.model.contig_2033.18

evm.model.contig_2033.18


Description : (at3g49010 : 217.0) Encodes 60S ribosomal protein L13. Homolog of human breast basic conserved 1 (BBC1).; breast basic conserved 1 (BBC1); FUNCTIONS IN: structural constituent of ribosome; INVOLVED IN: translation, ribosome biogenesis; LOCATED IN: in 6 components; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Ribosomal protein L13e (InterPro:IPR001380); BEST Arabidopsis thaliana protein match is: Ribosomal protein L13e family protein (TAIR:AT5G23900.1); Has 742 Blast hits to 736 proteins in 276 species: Archae - 0; Bacteria - 0; Metazoa - 295; Fungi - 161; Plants - 147; Viruses - 0; Other Eukaryotes - 139 (source: NCBI BLink). & (p41128|rl131_brana : 214.0) 60S ribosomal protein L13-1 (Cold-induced protein C24A) - Brassica napus (Rape) & (reliability: 434.0) & (original description: no original description)


Gene families : OG_42_0002061 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0002061_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Porphyridium release: evm.model.contig_2033.18
Cluster HCCA clusters: Cluster_25

Target Alias Description ECC score Gene Family Method Actions
165483 No alias breast basic conserved 1 0.1 Orthogroups_2024-Update
266648 No alias breast basic conserved 1 0.01 Orthogroups_2024-Update
A4A49_61903 No alias 60s ribosomal protein l13-1 0.19 Orthogroups_2024-Update
At3g49010 No alias 60S ribosomal protein L13... 0.07 Orthogroups_2024-Update
At5g23900 No alias 60S ribosomal protein L13... 0.03 Orthogroups_2024-Update
Bradi3g01600 No alias breast basic conserved 1 0.31 Orthogroups_2024-Update
Bradi3g16170 No alias breast basic conserved 1 0.23 Orthogroups_2024-Update
Brara.A02197.1 No alias component *(eL13) of large ribosomal-subunit (LSU) proteome 0.44 Orthogroups_2024-Update
Brara.F01634.1 No alias component *(eL13) of large ribosomal-subunit (LSU) proteome 0.51 Orthogroups_2024-Update
Brara.F02079.1 No alias component *(eL13) of large ribosomal-subunit (LSU) proteome 0.38 Orthogroups_2024-Update
Brara.I00594.1 No alias component *(eL13) of large ribosomal-subunit (LSU) proteome 0.06 Orthogroups_2024-Update
Cre14.g630100 No alias breast basic conserved 1 0.26 Orthogroups_2024-Update
Glyma.04G122700 No alias breast basic conserved 1 0.26 Orthogroups_2024-Update
Glyma.09G214400 No alias breast basic conserved 1 0.2 Orthogroups_2024-Update
Glyma.16G074600 No alias breast basic conserved 1 0.1 Orthogroups_2024-Update
Glyma.16G106300 No alias breast basic conserved 1 0.12 Orthogroups_2024-Update
HORVU6Hr1G009400.2 No alias component *(eL13) of large ribosomal-subunit (LSU) proteome 0.31 Orthogroups_2024-Update
HORVU7Hr1G067060.1 No alias component *(eL13) of large ribosomal-subunit (LSU) proteome 0.27 Orthogroups_2024-Update
Kfl00461_0040 kfl00461_0040_v1.1 (p41129|rl132_brana : 229.0) 60S ribosomal protein L13-2... 0.19 Orthogroups_2024-Update
LOC_Os03g37970 No alias ribosomal protein L13, putative, expressed 0.03 Orthogroups_2024-Update
LOC_Os06g02510 No alias ribosomal protein L13, putative, expressed 0.03 Orthogroups_2024-Update
MA_10430790g0030 No alias (at3g49010 : 263.0) Encodes 60S ribosomal protein L13.... 0.12 Orthogroups_2024-Update
Mp1g04920.1 No alias component RPL13 of LSU proteome component 0.11 Orthogroups_2024-Update
Mp2g19790.1 No alias component RPL13 of LSU proteome component 0.26 Orthogroups_2024-Update
PSME_00003763-RA No alias (at3g49010 : 179.0) Encodes 60S ribosomal protein L13.... 0.16 Orthogroups_2024-Update
PSME_00040067-RA No alias (at3g49010 : 296.0) Encodes 60S ribosomal protein L13.... 0.08 Orthogroups_2024-Update
PSME_00045638-RA No alias (at3g49010 : 335.0) Encodes 60S ribosomal protein L13.... 0.11 Orthogroups_2024-Update
Potri.003G102800 No alias breast basic conserved 1 0.17 Orthogroups_2024-Update
Potri.013G027600 No alias breast basic conserved 1 0.06 Orthogroups_2024-Update
Potri.016G082300 No alias breast basic conserved 1 0.1 Orthogroups_2024-Update
Pp1s126_52V6 No alias 60s ribosomal protein l13-2 0.03 Orthogroups_2024-Update
Pp1s21_106V6 No alias 60s ribosomal protein l13-2 0.57 Orthogroups_2024-Update
Pp1s459_9V6 No alias 60s ribosomal protein l13-2 0.38 Orthogroups_2024-Update
Pp1s47_277V6 No alias 60s ribosomal protein l13-2 0.01 Orthogroups_2024-Update
Pp1s58_38V6 No alias 60s ribosomal protein l13-2 0.11 Orthogroups_2024-Update
Seita.5G275700.1 No alias component *(eL13) of large ribosomal-subunit (LSU) proteome 0.32 Orthogroups_2024-Update
Seita.5G276200.1 No alias component *(eL13) of large ribosomal-subunit (LSU) proteome 0.29 Orthogroups_2024-Update
Sobic.003G408100.1 No alias component *(eL13) of large ribosomal-subunit (LSU) proteome 0.5 Orthogroups_2024-Update
Sobic.009G065400.1 No alias component *(eL13) of large ribosomal-subunit (LSU) proteome 0.44 Orthogroups_2024-Update
Sobic.009G237200.1 No alias component *(eL13) of large ribosomal-subunit (LSU) proteome 0.06 Orthogroups_2024-Update
Solyc08g075700 No alias 60S ribosomal protein L13 (AHRD V3.3 *** K4CMT7_SOLLC) 0.53 Orthogroups_2024-Update
Solyc12g096150 No alias 60S ribosomal protein L13 (AHRD V3.3 *** K4DH88_SOLLC) 0.27 Orthogroups_2024-Update
Sopen08g024350 No alias Ribosomal protein L13e 0.53 Orthogroups_2024-Update
Sopen12g032030 No alias Ribosomal protein L13e 0.22 Orthogroups_2024-Update
evm.model.tig00020629.36 No alias (p41128|rl131_brana : 211.0) 60S ribosomal protein L13-1... 0.31 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0003735 structural constituent of ribosome IEA InterProScan predictions
CC GO:0005622 intracellular IEA InterProScan predictions
CC GO:0005840 ribosome IEA InterProScan predictions
BP GO:0006412 translation IEA InterProScan predictions
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Type GO Term Name Evidence Source
MF GO:0000774 adenyl-nucleotide exchange factor activity IEP Predicted GO
MF GO:0003723 RNA binding IEP Predicted GO
BP GO:0006457 protein folding IEP Predicted GO
MF GO:0008097 5S rRNA binding IEP Predicted GO
CC GO:0015934 large ribosomal subunit IEP Predicted GO
MF GO:0019843 rRNA binding IEP Predicted GO
MF GO:0030234 enzyme regulator activity IEP Predicted GO
MF GO:0042802 identical protein binding IEP Predicted GO
MF GO:0042803 protein homodimerization activity IEP Predicted GO
CC GO:0044391 ribosomal subunit IEP Predicted GO
MF GO:0046983 protein dimerization activity IEP Predicted GO
MF GO:0051087 chaperone binding IEP Predicted GO
MF GO:0060589 nucleoside-triphosphatase regulator activity IEP Predicted GO
MF GO:0060590 ATPase regulator activity IEP Predicted GO
MF GO:0098772 molecular function regulator IEP Predicted GO
InterPro domains Description Start Stop
IPR001380 Ribosomal_L13e 7 186
No external refs found!