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  5. evm.model.contig_2045.6

evm.model.contig_2045.6


Description : (p41101|rl27_soltu : 144.0) 60S ribosomal protein L27 - Solanum tuberosum (Potato) & (at4g15000 : 137.0) Ribosomal L27e protein family; FUNCTIONS IN: structural constituent of ribosome; INVOLVED IN: translation; LOCATED IN: ribosome, cytosolic large ribosomal subunit, intracellular; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Ribosomal protein L27e (InterPro:IPR001141); BEST Arabidopsis thaliana protein match is: Ribosomal L27e protein family (TAIR:AT3G22230.1); Has 763 Blast hits to 763 proteins in 288 species: Archae - 0; Bacteria - 0; Metazoa - 339; Fungi - 144; Plants - 139; Viruses - 0; Other Eukaryotes - 141 (source: NCBI BLink). & (reliability: 274.0) & (original description: no original description)


Gene families : OG_42_0001324 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0001324_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Porphyridium release: evm.model.contig_2045.6
Cluster HCCA clusters: Cluster_25

Target Alias Description ECC score Gene Family Method Actions
166700 No alias Ribosomal L27e protein family 0.35 Orthogroups_2024-Update
A4A49_05318 No alias 60s ribosomal protein l27 0.31 Orthogroups_2024-Update
A4A49_21973 No alias 60s ribosomal protein l27 0.1 Orthogroups_2024-Update
At2g32220 No alias 60S ribosomal protein L27-1... 0.04 Orthogroups_2024-Update
At3g22230 No alias 60S ribosomal protein L27-2... 0.07 Orthogroups_2024-Update
At4g15000 No alias 60S ribosomal protein L27 [Source:UniProtKB/TrEMBL;Acc:Q0WRB8] 0.09 Orthogroups_2024-Update
Bradi1g30210 No alias Ribosomal L27e protein family 0.04 Orthogroups_2024-Update
Brara.A02020.1 No alias component *(eL27) of large ribosomal-subunit (LSU) proteome 0.11 Orthogroups_2024-Update
Brara.A02735.1 No alias component *(eL27) of large ribosomal-subunit (LSU) proteome 0.16 Orthogroups_2024-Update
Brara.C03864.1 No alias component *(eL27) of large ribosomal-subunit (LSU) proteome 0.44 Orthogroups_2024-Update
Brara.E01420.1 No alias component *(eL27) of large ribosomal-subunit (LSU) proteome 0.38 Orthogroups_2024-Update
Brara.E02021.1 No alias component *(eL27) of large ribosomal-subunit (LSU) proteome 0.05 Orthogroups_2024-Update
Brara.H00790.1 No alias component *(eL27) of large ribosomal-subunit (LSU) proteome 0.2 Orthogroups_2024-Update
Cre17.g701650 No alias Ribosomal L27e protein family 0.37 Orthogroups_2024-Update
GRMZM2G016250 No alias Ribosomal L27e protein family 0.25 Orthogroups_2024-Update
GRMZM2G326066 No alias Ribosomal L27e protein family 0.14 Orthogroups_2024-Update
Glyma.05G132800 No alias Ribosomal L27e protein family 0.04 Orthogroups_2024-Update
Glyma.09G052100 No alias Ribosomal L27e protein family 0.07 Orthogroups_2024-Update
Glyma.15G158400 No alias Ribosomal L27e protein family 0.22 Orthogroups_2024-Update
HORVU7Hr1G063280.1 No alias component *(eL27) of large ribosomal-subunit (LSU) proteome 0.21 Orthogroups_2024-Update
Kfl00071_0270 kfl00071_0270_v1.1 (q05462|rl27_pea : 209.0) 60S ribosomal protein L27 -... 0.16 Orthogroups_2024-Update
LOC_Os02g18380 No alias 60S ribosomal protein L27-3, putative, expressed 0.06 Orthogroups_2024-Update
MA_3390g0010 No alias (at3g22230 : 216.0) Ribosomal L27e protein family;... 0.02 Orthogroups_2024-Update
PSME_00015628-RA No alias (at3g22230 : 220.0) Ribosomal L27e protein family;... 0.21 Orthogroups_2024-Update
Potri.001G342500 No alias Ribosomal L27e protein family 0.11 Orthogroups_2024-Update
Potri.016G019000 No alias Ribosomal L27e protein family 0.04 Orthogroups_2024-Update
Pp1s101_74V6 No alias ribosomal protein 0.31 Orthogroups_2024-Update
Pp1s221_49V6 No alias ribosomal protein 0.46 Orthogroups_2024-Update
Pp1s83_116V6 No alias 60S ribosomal protein L27 [Pisum sativum] 0.27 Orthogroups_2024-Update
Seita.4G160400.1 No alias component *(eL27) of large ribosomal-subunit (LSU) proteome 0.28 Orthogroups_2024-Update
Sobic.006G221200.1 No alias component *(eL27) of large ribosomal-subunit (LSU) proteome 0.37 Orthogroups_2024-Update
Sobic.010G230700.1 No alias component *(eL27) of large ribosomal-subunit (LSU) proteome 0.41 Orthogroups_2024-Update
Solyc06g073300 No alias 60S ribosomal protein L27 (AHRD V3.3 *** A0A0V0HNB9_SOLCH) 0.39 Orthogroups_2024-Update
Solyc07g043360 No alias 60S ribosomal protein L27 (AHRD V3.3 *** K4CEJ5_SOLLC) 0.09 Orthogroups_2024-Update
Sopen06g029660 No alias Ribosomal L27e protein family 0.51 Orthogroups_2024-Update
Sopen07g022920 No alias Ribosomal L27e protein family 0.43 Orthogroups_2024-Update
evm.model.tig00021275.23 No alias (at3g22230 : 163.0) Ribosomal L27e protein family;... 0.39 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0003735 structural constituent of ribosome IEA InterProScan predictions
CC GO:0005622 intracellular IEA InterProScan predictions
CC GO:0005840 ribosome IEA InterProScan predictions
BP GO:0006412 translation IEA InterProScan predictions
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Type GO Term Name Evidence Source
MF GO:0000774 adenyl-nucleotide exchange factor activity IEP Predicted GO
MF GO:0003723 RNA binding IEP Predicted GO
BP GO:0006457 protein folding IEP Predicted GO
MF GO:0008097 5S rRNA binding IEP Predicted GO
CC GO:0015934 large ribosomal subunit IEP Predicted GO
MF GO:0019843 rRNA binding IEP Predicted GO
MF GO:0030234 enzyme regulator activity IEP Predicted GO
MF GO:0042802 identical protein binding IEP Predicted GO
MF GO:0042803 protein homodimerization activity IEP Predicted GO
CC GO:0044391 ribosomal subunit IEP Predicted GO
MF GO:0046983 protein dimerization activity IEP Predicted GO
MF GO:0051087 chaperone binding IEP Predicted GO
MF GO:0060589 nucleoside-triphosphatase regulator activity IEP Predicted GO
MF GO:0060590 ATPase regulator activity IEP Predicted GO
MF GO:0098772 molecular function regulator IEP Predicted GO
InterPro domains Description Start Stop
IPR001141 Ribosomal_L27e 52 136
No external refs found!