evm.model.contig_2053.5

Description : (at5g67510 : 146.0) Translation protein SH3-like family protein; FUNCTIONS IN: structural constituent of ribosome, protein binding; INVOLVED IN: translation; LOCATED IN: cytosolic ribosome, cytosolic large ribosomal subunit, large ribosomal subunit; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Translation protein SH3-like (InterPro:IPR008991), Ribosomal protein L26, eukaryotic/archaeal (InterPro:IPR005756), Ribosomal protein L24, SH3-like (InterPro:IPR014723), Ribosomal protein L24/L26, conserved site (InterPro:IPR005825), KOW (InterPro:IPR005824); BEST Arabidopsis thaliana protein match is: Translation protein SH3-like family protein (TAIR:AT3G49910.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). & (q39411|rl26_brara : 137.0) 60S ribosomal protein L26 - Brassica rapa (Turnip) & (reliability: 292.0) & (original description: no original description)

Gene families : OG_42_0002250 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0002250_tree

Sequence : coding (download), protein (download)

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	Porphyridium release: evm.model.contig_2053.5
Cluster	HCCA clusters: Cluster_25

Target	Alias	Description	ECC score	Gene Family Method
227399	No alias	Translation protein SH3-like family protein	0.36	Orthogroups_2024-Update
A4A49_01785	No alias	60s ribosomal protein l26-1	0.11	Orthogroups_2024-Update
A4A49_64025	No alias	60s ribosomal protein l26-1	0.23	Orthogroups_2024-Update
At3g49910	No alias	60S ribosomal protein L26-1...	0.03	Orthogroups_2024-Update
At5g67510	No alias	60S ribosomal protein L26-2...	0.05	Orthogroups_2024-Update
Bradi2g06250	No alias	Translation protein SH3-like family protein	0.02	Orthogroups_2024-Update
Brara.A02158.1	No alias	component *(uL24) of large ribosomal-subunit (LSU) proteome	0.39	Orthogroups_2024-Update
Brara.C04297.1	No alias	component *(uL24) of large ribosomal-subunit (LSU) proteome	0.29	Orthogroups_2024-Update
Brara.I03333.1	No alias	component *(uL24) of large ribosomal-subunit (LSU) proteome	0.29	Orthogroups_2024-Update
Cre01.g040000	No alias	Translation protein SH3-like family protein	0.41	Orthogroups_2024-Update
Glyma.01G193800	No alias	Translation protein SH3-like family protein	0.07	Orthogroups_2024-Update
Glyma.11G048100	No alias	Translation protein SH3-like family protein	0.33	Orthogroups_2024-Update
Glyma.13G243100	No alias	Translation protein SH3-like family protein	0.1	Orthogroups_2024-Update
Glyma.13G245300	No alias	Translation protein SH3-like family protein	0.14	Orthogroups_2024-Update
Glyma.15G068500	No alias	Translation protein SH3-like family protein	0.1	Orthogroups_2024-Update
HORVU3Hr1G026880.1	No alias	component *(uL24) of large ribosomal-subunit (LSU) proteome	0.08	Orthogroups_2024-Update
Kfl00486_0110	kfl00486_0110_v1.1	(at3g49910 : 157.0) Translation protein SH3-like family...	0.16	Orthogroups_2024-Update
LOC_Os01g04730	No alias	ribosomal protein L24, putative, expressed	0.03	Orthogroups_2024-Update
MA_13141g0010	No alias	(at5g67510 : 168.0) Translation protein SH3-like family...	0.07	Orthogroups_2024-Update
Mp2g12870.1	No alias	component RPL26 of LSU proteome component	0.1	Orthogroups_2024-Update
PSME_00027135-RA	No alias	(at5g67510 : 172.0) Translation protein SH3-like family...	0.15	Orthogroups_2024-Update
Potri.005G082600	No alias	Translation protein SH3-like family protein	0.04	Orthogroups_2024-Update
Potri.007G055900	No alias	Translation protein SH3-like family protein	0.19	Orthogroups_2024-Update
Potri.007G085200	No alias	Translation protein SH3-like family protein	0.09	Orthogroups_2024-Update
Pp1s120_90V6	No alias	putative ribosomal protein L26 [Oryza sativa (japonica...	0.35	Orthogroups_2024-Update
Pp1s13_138V6	No alias	60s ribosomal protein	0.34	Orthogroups_2024-Update
Pp1s30_298V6	No alias	60s ribosomal protein	0.31	Orthogroups_2024-Update
Pp1s59_51V6	No alias	K9I9.7; 60S ribosomal protein L26 (RPL26B) [KO:K02898]...	0.07	Orthogroups_2024-Update
Pp1s69_191V6	No alias	putative ribosomal protein L26 [Oryza sativa (japonica...	0.21	Orthogroups_2024-Update
Seita.5G096600.1	No alias	component *(uL24) of large ribosomal-subunit (LSU) proteome	0.4	Orthogroups_2024-Update
Sobic.003G078200.1	No alias	component *(uL24) of large ribosomal-subunit (LSU) proteome	0.47	Orthogroups_2024-Update
Solyc02g064670	No alias	60S ribosomal protein L26-1 (AHRD V3.3 *** RL261_ARATH)	0.37	Orthogroups_2024-Update
Solyc02g092430	No alias	60S ribosomal protein L26-1 (AHRD V3.3 *** RL261_ARATH)	0.41	Orthogroups_2024-Update
Solyc03g044000	No alias	60S ribosomal protein L26-1 (AHRD V3.3 *** RL261_ARATH)	0.13	Orthogroups_2024-Update
Sopen02g014760	No alias	KOW motif	0.35	Orthogroups_2024-Update
Sopen02g036980	No alias	KOW motif	0.1	Orthogroups_2024-Update
Sopen03g007800	No alias	KOW motif	0.04	Orthogroups_2024-Update
evm.model.tig00000144.60	No alias	(at3g49910 : 158.0) Translation protein SH3-like family...	0.32	Orthogroups_2024-Update

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003735	structural constituent of ribosome	IEA	InterProScan predictions
MF	GO:0005198	structural molecule activity	None	Extended
CC	GO:0005575	cellular_component	None	Extended
BP	GO:0006412	translation	IEA	InterProScan predictions
BP	GO:0006518	peptide metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009058	biosynthetic process	None	Extended
BP	GO:0009059	macromolecule biosynthetic process	None	Extended
BP	GO:0009987	cellular process	None	Extended
CC	GO:0015934	large ribosomal subunit	IEA	InterProScan predictions
BP	GO:0019538	protein metabolic process	None	Extended
CC	GO:0032991	protein-containing complex	None	Extended
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
BP	GO:0034645	cellular macromolecule biosynthetic process	None	Extended
BP	GO:0043043	peptide biosynthetic process	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
BP	GO:0043603	cellular amide metabolic process	None	Extended
BP	GO:0043604	amide biosynthetic process	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0044249	cellular biosynthetic process	None	Extended
BP	GO:0044260	cellular macromolecule metabolic process	None	Extended
BP	GO:0044267	cellular protein metabolic process	None	Extended
BP	GO:0044271	cellular nitrogen compound biosynthetic process	None	Extended
CC	GO:0044391	ribosomal subunit	None	Extended
CC	GO:0044422	organelle part	None	Extended
CC	GO:0044424	intracellular part	None	Extended
CC	GO:0044444	cytoplasmic part	None	Extended
CC	GO:0044446	intracellular organelle part	None	Extended
CC	GO:0044464	cell part	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
BP	GO:1901564	organonitrogen compound metabolic process	None	Extended
BP	GO:1901566	organonitrogen compound biosynthetic process	None	Extended
BP	GO:1901576	organic substance biosynthetic process	None	Extended
CC	GO:1990904	ribonucleoprotein complex	None	Extended

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Type	GO Term	Name	Evidence	Source
MF	GO:0000774	adenyl-nucleotide exchange factor activity	IEP	Predicted GO
MF	GO:0003676	nucleic acid binding	IEP	Predicted GO
MF	GO:0003723	RNA binding	IEP	Predicted GO
MF	GO:0003746	translation elongation factor activity	IEP	Predicted GO
MF	GO:0003924	GTPase activity	IEP	Predicted GO
CC	GO:0005622	intracellular	IEP	Predicted GO
CC	GO:0005741	mitochondrial outer membrane	IEP	Predicted GO
CC	GO:0005840	ribosome	IEP	Predicted GO
BP	GO:0006414	translational elongation	IEP	Predicted GO
BP	GO:0006417	regulation of translation	IEP	Predicted GO
BP	GO:0006448	regulation of translational elongation	IEP	Predicted GO
BP	GO:0006449	regulation of translational termination	IEP	Predicted GO
BP	GO:0006452	translational frameshifting	IEP	Predicted GO
MF	GO:0008097	5S rRNA binding	IEP	Predicted GO
BP	GO:0009891	positive regulation of biosynthetic process	IEP	Predicted GO
BP	GO:0009893	positive regulation of metabolic process	IEP	Predicted GO
BP	GO:0010557	positive regulation of macromolecule biosynthetic process	IEP	Predicted GO
BP	GO:0010604	positive regulation of macromolecule metabolic process	IEP	Predicted GO
BP	GO:0010608	posttranscriptional regulation of gene expression	IEP	Predicted GO
BP	GO:0010628	positive regulation of gene expression	IEP	Predicted GO
MF	GO:0019843	rRNA binding	IEP	Predicted GO
CC	GO:0019867	outer membrane	IEP	Predicted GO
BP	GO:0031325	positive regulation of cellular metabolic process	IEP	Predicted GO
BP	GO:0031328	positive regulation of cellular biosynthetic process	IEP	Predicted GO
CC	GO:0031968	organelle outer membrane	IEP	Predicted GO
BP	GO:0032270	positive regulation of cellular protein metabolic process	IEP	Predicted GO
BP	GO:0034248	regulation of cellular amide metabolic process	IEP	Predicted GO
BP	GO:0034250	positive regulation of cellular amide metabolic process	IEP	Predicted GO
MF	GO:0042802	identical protein binding	IEP	Predicted GO
MF	GO:0042803	protein homodimerization activity	IEP	Predicted GO
MF	GO:0043021	ribonucleoprotein complex binding	IEP	Predicted GO
MF	GO:0043022	ribosome binding	IEP	Predicted GO
CC	GO:0043226	organelle	IEP	Predicted GO
CC	GO:0043228	non-membrane-bounded organelle	IEP	Predicted GO
CC	GO:0043229	intracellular organelle	IEP	Predicted GO
CC	GO:0043232	intracellular non-membrane-bounded organelle	IEP	Predicted GO
BP	GO:0043243	positive regulation of protein complex disassembly	IEP	Predicted GO
BP	GO:0043244	regulation of protein complex disassembly	IEP	Predicted GO
MF	GO:0044877	protein-containing complex binding	IEP	Predicted GO
BP	GO:0045727	positive regulation of translation	IEP	Predicted GO
BP	GO:0045901	positive regulation of translational elongation	IEP	Predicted GO
BP	GO:0045905	positive regulation of translational termination	IEP	Predicted GO
BP	GO:0048518	positive regulation of biological process	IEP	Predicted GO
BP	GO:0048522	positive regulation of cellular process	IEP	Predicted GO
BP	GO:0051128	regulation of cellular component organization	IEP	Predicted GO
BP	GO:0051130	positive regulation of cellular component organization	IEP	Predicted GO
BP	GO:0051173	positive regulation of nitrogen compound metabolic process	IEP	Predicted GO
BP	GO:0051247	positive regulation of protein metabolic process	IEP	Predicted GO
MF	GO:0060590	ATPase regulator activity	IEP	Predicted GO
CC	GO:0098588	bounding membrane of organelle	IEP	Predicted GO
CC	GO:0098805	whole membrane	IEP	Predicted GO

InterPro domains	Description	Start	Stop
IPR005756	Ribosomal_L26/L24P_euk/arc	8	121

External Links

No external refs found!

evm.model.contig_2053.5

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation