evm.model.contig_2059.33

Description : (at1g61580 : 514.0) R-protein L3 B (RPL3B); FUNCTIONS IN: structural constituent of ribosome; INVOLVED IN: translation; LOCATED IN: ribosome, cytosolic large ribosomal subunit, membrane; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Ribosomal protein L3 (InterPro:IPR000597), Ribosomal protein L3, conserved site (InterPro:IPR019926), Translation elongation/initiation factor/Ribosomal, beta-barrel (InterPro:IPR009000); BEST Arabidopsis thaliana protein match is: ribosomal protein 1 (TAIR:AT1G43170.8); Has 2774 Blast hits to 2767 proteins in 966 species: Archae - 329; Bacteria - 1185; Metazoa - 455; Fungi - 168; Plants - 207; Viruses - 1; Other Eukaryotes - 429 (source: NCBI BLink). & (p35684|rl3_orysj : 508.0) 60S ribosomal protein L3 OS=Oryza sativa subsp. japonica GN=RPL3 PE=2 SV=2 & (reliability: 1028.0) & (original description: no original description)

Gene families : OG_42_0002422 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0002422_tree

Sequence : coding (download), protein (download)

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	Porphyridium release: evm.model.contig_2059.33
Cluster	HCCA clusters: Cluster_25

Target	Alias	Description	ECC score	Gene Family Method
270706	No alias	ribosomal protein 1	0.24	Orthogroups_2024-Update
At1g43170	No alias	60S ribosomal protein L3-1...	0.01	Orthogroups_2024-Update
Bradi4g24610	No alias	ribosomal protein 1	0.26	Orthogroups_2024-Update
Bradi4g41680	No alias	ribosomal protein 1	0.24	Orthogroups_2024-Update
Brara.B02465.1	No alias	component *(uL3) of large ribosomal-subunit (LSU) proteome	0.25	Orthogroups_2024-Update
Brara.I01735.1	No alias	component *(uL3) of large ribosomal-subunit (LSU) proteome	0.34	Orthogroups_2024-Update
GRMZM2G109677	No alias	ribosomal protein 1	0.04	Orthogroups_2024-Update
Glyma.20G168100	No alias	ribosomal protein 1	0.09	Orthogroups_2024-Update
HORVU4Hr1G019980.1	No alias	component *(uL3) of large ribosomal-subunit (LSU) proteome	0.2	Orthogroups_2024-Update
HORVU5Hr1G036630.1	No alias	component *(uL3) of large ribosomal-subunit (LSU) proteome	0.02	Orthogroups_2024-Update
Kfl01033_0020	kfl01033_0020_v1.1	(at1g61580 : 584.0) R-protein L3 B (RPL3B); FUNCTIONS...	0.14	Orthogroups_2024-Update
LOC_Os11g06750	No alias	ribosomal protein L3, putative, expressed	0.03	Orthogroups_2024-Update
LOC_Os12g07010	No alias	ribosomal protein L3, putative, expressed	0.03	Orthogroups_2024-Update
MA_10432758g0010	No alias	(p35684\|rl3_orysj : 667.0) 60S ribosomal protein L3...	0.03	Orthogroups_2024-Update
Mp1g18990.1	No alias	component RPL3 of LSU proteome component	0.1	Orthogroups_2024-Update
PSME_00045974-RA	No alias	(p35684\|rl3_orysj : 681.0) 60S ribosomal protein L3...	0.02	Orthogroups_2024-Update
PSME_00049106-RA	No alias	(p35684\|rl3_orysj : 665.0) 60S ribosomal protein L3...	0.02	Orthogroups_2024-Update
Potri.002G066200	No alias	ribosomal protein 1	0.09	Orthogroups_2024-Update
Potri.005G194500	No alias	ribosomal protein 1	0.09	Orthogroups_2024-Update
Pp1s330_36V6	No alias	ribosomal protein l3	0.31	Orthogroups_2024-Update
Pp1s77_207V6	No alias	ribosomal protein l3	0.01	Orthogroups_2024-Update
Seita.7G290900.1	No alias	component *(uL3) of large ribosomal-subunit (LSU) proteome	0.15	Orthogroups_2024-Update
Seita.8G046000.1	No alias	component *(uL3) of large ribosomal-subunit (LSU) proteome	0.12	Orthogroups_2024-Update
Sobic.005G050500.1	No alias	component *(uL3) of large ribosomal-subunit (LSU) proteome	0.24	Orthogroups_2024-Update
Sobic.006G216600.1	No alias	component *(uL3) of large ribosomal-subunit (LSU) proteome	0.3	Orthogroups_2024-Update
Solyc01g104590	No alias	ribosomal protein L3	0.36	Orthogroups_2024-Update
Sopen01g045870	No alias	Ribosomal protein L3	0.02	Orthogroups_2024-Update
Sopen01g047100	No alias	Ribosomal protein L3	0.34	Orthogroups_2024-Update
evm.model.tig00000025.50	No alias	(p35684\|rl3_orysj : 551.0) 60S ribosomal protein L3...	0.03	Orthogroups_2024-Update

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003735	structural constituent of ribosome	IEA	InterProScan predictions
MF	GO:0005198	structural molecule activity	None	Extended
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005622	intracellular	IEA	InterProScan predictions
CC	GO:0005840	ribosome	IEA	InterProScan predictions
BP	GO:0006412	translation	IEA	InterProScan predictions
BP	GO:0006518	peptide metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009058	biosynthetic process	None	Extended
BP	GO:0009059	macromolecule biosynthetic process	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0019538	protein metabolic process	None	Extended
CC	GO:0032991	protein-containing complex	None	Extended
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
BP	GO:0034645	cellular macromolecule biosynthetic process	None	Extended
BP	GO:0043043	peptide biosynthetic process	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
CC	GO:0043226	organelle	None	Extended
CC	GO:0043228	non-membrane-bounded organelle	None	Extended
CC	GO:0043229	intracellular organelle	None	Extended
CC	GO:0043232	intracellular non-membrane-bounded organelle	None	Extended
BP	GO:0043603	cellular amide metabolic process	None	Extended
BP	GO:0043604	amide biosynthetic process	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0044249	cellular biosynthetic process	None	Extended
BP	GO:0044260	cellular macromolecule metabolic process	None	Extended
BP	GO:0044267	cellular protein metabolic process	None	Extended
BP	GO:0044271	cellular nitrogen compound biosynthetic process	None	Extended
CC	GO:0044424	intracellular part	None	Extended
CC	GO:0044444	cytoplasmic part	None	Extended
CC	GO:0044464	cell part	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
BP	GO:1901564	organonitrogen compound metabolic process	None	Extended
BP	GO:1901566	organonitrogen compound biosynthetic process	None	Extended
BP	GO:1901576	organic substance biosynthetic process	None	Extended
CC	GO:1990904	ribonucleoprotein complex	None	Extended

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Type	GO Term	Name	Evidence	Source
MF	GO:0000213	tRNA-intron endonuclease activity	IEP	Predicted GO
BP	GO:0000394	RNA splicing, via endonucleolytic cleavage and ligation	IEP	Predicted GO
MF	GO:0000774	adenyl-nucleotide exchange factor activity	IEP	Predicted GO
MF	GO:0003676	nucleic acid binding	IEP	Predicted GO
MF	GO:0003723	RNA binding	IEP	Predicted GO
MF	GO:0003743	translation initiation factor activity	IEP	Predicted GO
MF	GO:0003746	translation elongation factor activity	IEP	Predicted GO
MF	GO:0003924	GTPase activity	IEP	Predicted GO
MF	GO:0004549	tRNA-specific ribonuclease activity	IEP	Predicted GO
CC	GO:0005741	mitochondrial outer membrane	IEP	Predicted GO
CC	GO:0005852	eukaryotic translation initiation factor 3 complex	IEP	Predicted GO
BP	GO:0006388	tRNA splicing, via endonucleolytic cleavage and ligation	IEP	Predicted GO
BP	GO:0006414	translational elongation	IEP	Predicted GO
BP	GO:0006417	regulation of translation	IEP	Predicted GO
BP	GO:0006448	regulation of translational elongation	IEP	Predicted GO
BP	GO:0006449	regulation of translational termination	IEP	Predicted GO
BP	GO:0006452	translational frameshifting	IEP	Predicted GO
BP	GO:0006457	protein folding	IEP	Predicted GO
MF	GO:0008097	5S rRNA binding	IEP	Predicted GO
MF	GO:0008135	translation factor activity, RNA binding	IEP	Predicted GO
BP	GO:0009891	positive regulation of biosynthetic process	IEP	Predicted GO
BP	GO:0009893	positive regulation of metabolic process	IEP	Predicted GO
BP	GO:0010557	positive regulation of macromolecule biosynthetic process	IEP	Predicted GO
BP	GO:0010604	positive regulation of macromolecule metabolic process	IEP	Predicted GO
BP	GO:0010608	posttranscriptional regulation of gene expression	IEP	Predicted GO
BP	GO:0010628	positive regulation of gene expression	IEP	Predicted GO
CC	GO:0015934	large ribosomal subunit	IEP	Predicted GO
MF	GO:0016892	endoribonuclease activity, producing 3'-phosphomonoesters	IEP	Predicted GO
MF	GO:0016894	endonuclease activity, active with either ribo- or deoxyribonucleic acids and producing 3'-phosphomonoesters	IEP	Predicted GO
MF	GO:0019843	rRNA binding	IEP	Predicted GO
CC	GO:0019867	outer membrane	IEP	Predicted GO
BP	GO:0031325	positive regulation of cellular metabolic process	IEP	Predicted GO
BP	GO:0031328	positive regulation of cellular biosynthetic process	IEP	Predicted GO
CC	GO:0031966	mitochondrial membrane	IEP	Predicted GO
CC	GO:0031968	organelle outer membrane	IEP	Predicted GO
BP	GO:0032270	positive regulation of cellular protein metabolic process	IEP	Predicted GO
BP	GO:0034248	regulation of cellular amide metabolic process	IEP	Predicted GO
BP	GO:0034250	positive regulation of cellular amide metabolic process	IEP	Predicted GO
MF	GO:0042802	identical protein binding	IEP	Predicted GO
MF	GO:0042803	protein homodimerization activity	IEP	Predicted GO
MF	GO:0043021	ribonucleoprotein complex binding	IEP	Predicted GO
MF	GO:0043022	ribosome binding	IEP	Predicted GO
BP	GO:0043243	positive regulation of protein complex disassembly	IEP	Predicted GO
BP	GO:0043244	regulation of protein complex disassembly	IEP	Predicted GO
CC	GO:0044391	ribosomal subunit	IEP	Predicted GO
MF	GO:0044877	protein-containing complex binding	IEP	Predicted GO
BP	GO:0045727	positive regulation of translation	IEP	Predicted GO
BP	GO:0045901	positive regulation of translational elongation	IEP	Predicted GO
BP	GO:0045905	positive regulation of translational termination	IEP	Predicted GO
BP	GO:0048518	positive regulation of biological process	IEP	Predicted GO
BP	GO:0048522	positive regulation of cellular process	IEP	Predicted GO
MF	GO:0051087	chaperone binding	IEP	Predicted GO
BP	GO:0051128	regulation of cellular component organization	IEP	Predicted GO
BP	GO:0051130	positive regulation of cellular component organization	IEP	Predicted GO
BP	GO:0051173	positive regulation of nitrogen compound metabolic process	IEP	Predicted GO
BP	GO:0051247	positive regulation of protein metabolic process	IEP	Predicted GO
MF	GO:0060590	ATPase regulator activity	IEP	Predicted GO
CC	GO:0098588	bounding membrane of organelle	IEP	Predicted GO
CC	GO:0098805	whole membrane	IEP	Predicted GO

InterPro domains	Description	Start	Stop
IPR000597	Ribosomal_L3	1	366

External Links

No external refs found!

evm.model.contig_2059.33

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation