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  5. evm.model.contig_2082.8

evm.model.contig_2082.8


Description : (at1g48410 : 352.0) Encodes an RNA Slicer that selectively recruits microRNAs and siRNAs. There is currently no evidence that AGO1 Slicer is in a high molecular weight RNA-induced silencing complex (RISC). Mutants are defective in post-transcriptional gene silencing and have pleiotropic developmental and morphological defects. Through its action on the regulation of ARF17 expression, the protein regulates genes involved at the cross talk between auxin and light signaling during adventitious root development. AGO1 seems to be targeted for degradation by silencing suppressor F-box-containing proteins from Turnip yellow virus and Cucurbit aphid-borne yellow virus.; ARGONAUTE 1 (AGO1); CONTAINS InterPro DOMAIN/s: Domain of unknown function DUF1785 (InterPro:IPR014811), Stem cell self-renewal protein Piwi (InterPro:IPR003165), Argonaute/Dicer protein, PAZ (InterPro:IPR003100), Polynucleotidyl transferase, ribonuclease H fold (InterPro:IPR012337); BEST Arabidopsis thaliana protein match is: Stabilizer of iron transporter SufD / Polynucleotidyl transferase (TAIR:AT5G43810.2). & (reliability: 692.0) & (original description: no original description)


Gene families : OG_42_0000134 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000134_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Porphyridium release: evm.model.contig_2082.8
Cluster HCCA clusters: Cluster_17

Target Alias Description ECC score Gene Family Method Actions
A4A49_39268 No alias protein argonaute 10 0.02 Orthogroups_2024-Update
At2g27040 No alias Protein argonaute 4 [Source:UniProtKB/Swiss-Prot;Acc:Q9ZVD5] 0.02 Orthogroups_2024-Update
Bradi1g28260 No alias Stabilizer of iron transporter SufD / Polynucleotidyl transferase 0.03 Orthogroups_2024-Update
Bradi1g54977 No alias Argonaute family protein 0.01 Orthogroups_2024-Update
Bradi3g60697 No alias Stabilizer of iron transporter SufD / Polynucleotidyl transferase 0.01 Orthogroups_2024-Update
Brara.J01517.1 No alias siRNA-integrating factor *(AGO) 0.01 Orthogroups_2024-Update
GRMZM2G079080 No alias Stabilizer of iron transporter SufD / Polynucleotidyl transferase 0.04 Orthogroups_2024-Update
Glyma.01G053100 No alias Argonaute family protein 0.02 Orthogroups_2024-Update
Glyma.02G111600 No alias Argonaute family protein 0.02 Orthogroups_2024-Update
Glyma.12G083500 No alias Argonaute family protein 0.03 Orthogroups_2024-Update
HORVU3Hr1G021290.1 No alias Unknown function 0.05 Orthogroups_2024-Update
HORVU6Hr1G036840.2 No alias miRNA recruiting factor (AGO) of RNA-induced silencing... 0.03 Orthogroups_2024-Update
HORVU7Hr1G007000.26 No alias Unknown function 0.02 Orthogroups_2024-Update
HORVU7Hr1G107770.4 No alias siRNA-integrating factor *(AGO) 0.03 Orthogroups_2024-Update
LOC_Os02g07310 No alias argonaute, putative, expressed 0.02 Orthogroups_2024-Update
LOC_Os03g47820 No alias PINHEAD, putative, expressed 0.01 Orthogroups_2024-Update
PSME_00001016-RA No alias (at5g43810 : 1422.0) Encodes a member of the EIF2C... 0.01 Orthogroups_2024-Update
PSME_00014451-RA No alias (at1g69440 : 623.0) Encodes ARGONAUTE7, a member of the... 0.01 Orthogroups_2024-Update
PSME_00027871-RA No alias (at1g48410 : 522.0) Encodes an RNA Slicer that... 0.04 Orthogroups_2024-Update
Potri.006G118600 No alias Argonaute family protein 0.01 Orthogroups_2024-Update
Potri.012G118700 No alias Argonaute family protein 0.03 Orthogroups_2024-Update
Potri.014G159400 No alias Argonaute family protein 0.01 Orthogroups_2024-Update
Seita.9G359200.1 No alias regulatory protein *(AGO7) of transacting siRNA pathway 0.04 Orthogroups_2024-Update
Sobic.001G136150.1 No alias Unknown function 0.01 Orthogroups_2024-Update
Sobic.001G153600.1 No alias Unknown function 0.03 Orthogroups_2024-Update
Sopen01g004450 No alias Piwi domain 0.03 Orthogroups_2024-Update
Sopen01g006840 No alias Piwi domain 0.03 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEA InterProScan predictions
MF GO:0005515 protein binding IEA InterProScan predictions
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Type GO Term Name Evidence Source
MF GO:0004470 malic enzyme activity IEP Predicted GO
MF GO:0004471 malate dehydrogenase (decarboxylating) (NAD+) activity IEP Predicted GO
MF GO:0004888 transmembrane signaling receptor activity IEP Predicted GO
MF GO:0004970 ionotropic glutamate receptor activity IEP Predicted GO
MF GO:0005216 ion channel activity IEP Predicted GO
MF GO:0005230 extracellular ligand-gated ion channel activity IEP Predicted GO
MF GO:0008066 glutamate receptor activity IEP Predicted GO
MF GO:0015267 channel activity IEP Predicted GO
MF GO:0015276 ligand-gated ion channel activity IEP Predicted GO
MF GO:0016615 malate dehydrogenase activity IEP Predicted GO
MF GO:0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor IEP Predicted GO
MF GO:0022803 passive transmembrane transporter activity IEP Predicted GO
MF GO:0022824 transmitter-gated ion channel activity IEP Predicted GO
MF GO:0022834 ligand-gated channel activity IEP Predicted GO
MF GO:0022835 transmitter-gated channel activity IEP Predicted GO
MF GO:0022836 gated channel activity IEP Predicted GO
MF GO:0022838 substrate-specific channel activity IEP Predicted GO
MF GO:0022839 ion gated channel activity IEP Predicted GO
MF GO:0030594 neurotransmitter receptor activity IEP Predicted GO
MF GO:0038023 signaling receptor activity IEP Predicted GO
MF GO:0051287 NAD binding IEP Predicted GO
MF GO:0060089 molecular transducer activity IEP Predicted GO
InterPro domains Description Start Stop
IPR032474 Argonaute_N 44 191
IPR003165 Piwi 554 858
IPR014811 ArgoL1 203 251
IPR003100 PAZ_dom 270 382
No external refs found!