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  5. Sopen01g006160

Sopen01g006160


Description : PPR repeat


Gene families : OG_42_0000001 (Orthogroups_2024-Update) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Solanum release: Sopen01g006160
Cluster HCCA clusters: Cluster_14

Target Alias Description ECC score Gene Family Method Actions
107260 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.02 Orthogroups_2024-Update
424099 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.02 Orthogroups_2024-Update
A4A49_17130 No alias pentatricopeptide repeat-containing protein dot4, chloroplastic 0.05 Orthogroups_2024-Update
At3g57430 No alias Pentatricopeptide repeat-containing protein At3g57430,... 0.04 Orthogroups_2024-Update
Bradi1g00491 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.02 Orthogroups_2024-Update
Bradi1g21907 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.01 Orthogroups_2024-Update
Bradi2g42710 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.02 Orthogroups_2024-Update
Bradi2g45110 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.03 Orthogroups_2024-Update
Bradi2g62180 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.02 Orthogroups_2024-Update
Bradi3g47510 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.02 Orthogroups_2024-Update
Bradi3g48960 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.02 Orthogroups_2024-Update
Bradi4g30190 No alias pentatricopeptide (PPR) repeat-containing protein 0.02 Orthogroups_2024-Update
Brara.F03480.1 No alias Unknown function 0.02 Orthogroups_2024-Update
GRMZM2G129783 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.03 Orthogroups_2024-Update
GRMZM2G154743 No alias Pentatricopeptide repeat (PPR-like) superfamily protein 0.02 Orthogroups_2024-Update
GRMZM2G175253 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.02 Orthogroups_2024-Update
Glyma.01G180600 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.03 Orthogroups_2024-Update
Glyma.01G228000 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.03 Orthogroups_2024-Update
Glyma.02G043900 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.03 Orthogroups_2024-Update
Glyma.03G227900 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.03 Orthogroups_2024-Update
Glyma.05G125500 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.03 Orthogroups_2024-Update
Glyma.07G068800 No alias Pentatricopeptide repeat (PPR-like) superfamily protein 0.03 Orthogroups_2024-Update
Glyma.07G127400 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.02 Orthogroups_2024-Update
Glyma.08G252400 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.03 Orthogroups_2024-Update
Glyma.08G291800 No alias pentatricopeptide (PPR) repeat-containing protein 0.03 Orthogroups_2024-Update
Glyma.09G168800 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.02 Orthogroups_2024-Update
Glyma.10G230100 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.02 Orthogroups_2024-Update
Glyma.10G240000 No alias Pentatricopeptide repeat (PPR-like) superfamily protein 0.03 Orthogroups_2024-Update
Glyma.12G239300 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.02 Orthogroups_2024-Update
Glyma.13G220450 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.02 Orthogroups_2024-Update
Glyma.15G016600 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.03 Orthogroups_2024-Update
Glyma.15G059000 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.03 Orthogroups_2024-Update
Glyma.16G049800 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.03 Orthogroups_2024-Update
Glyma.20G013300 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.02 Orthogroups_2024-Update
LOC_Os01g45840 No alias CRR2, putative, expressed 0.02 Orthogroups_2024-Update
LOC_Os03g04390 No alias pentatricopeptide, putative, expressed 0.03 Orthogroups_2024-Update
LOC_Os04g43430 No alias pentatricopeptide, putative, expressed 0.02 Orthogroups_2024-Update
LOC_Os05g49920 No alias pentatricopeptide, putative, expressed 0.03 Orthogroups_2024-Update
LOC_Os06g02200 No alias pentatricopeptide, putative, expressed 0.02 Orthogroups_2024-Update
PSME_00024152-RA No alias (at2g13600 : 434.0) Pentatricopeptide repeat (PPR)... 0.02 Orthogroups_2024-Update
Potri.001G019500 No alias SLOW GROWTH 1 0.03 Orthogroups_2024-Update
Potri.001G217600 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.02 Orthogroups_2024-Update
Potri.002G239600 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.02 Orthogroups_2024-Update
Potri.003G031600 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.02 Orthogroups_2024-Update
Potri.004G124400 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.03 Orthogroups_2024-Update
Potri.004G237000 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.04 Orthogroups_2024-Update
Potri.006G245300 No alias Function unknown 0.02 Orthogroups_2024-Update
Potri.013G044700 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.03 Orthogroups_2024-Update
Potri.013G152000 No alias mitochondrial editing factor 22 0.02 Orthogroups_2024-Update
Potri.017G083900 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.02 Orthogroups_2024-Update
Potri.017G091600 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.02 Orthogroups_2024-Update
Seita.1G272500.1 No alias Unknown function 0.03 Orthogroups_2024-Update
Seita.2G001800.1 No alias RNA editing factor *(ELI1) 0.02 Orthogroups_2024-Update
Seita.2G302700.1 No alias Unknown function 0.03 Orthogroups_2024-Update
Seita.3G075900.1 No alias RNA editing factor *(ECD1) 0.02 Orthogroups_2024-Update
Seita.3G137300.1 No alias RNA editing factor *(ECB2/VAC1) 0.02 Orthogroups_2024-Update
Seita.4G216600.1 No alias Unknown function 0.02 Orthogroups_2024-Update
Seita.4G218400.1 No alias Unknown function 0.02 Orthogroups_2024-Update
Seita.5G243300.1 No alias Unknown function 0.03 Orthogroups_2024-Update
Seita.5G360300.1 No alias Unknown function 0.03 Orthogroups_2024-Update
Seita.5G381200.1 No alias RNA editing factor *(CRR2) 0.02 Orthogroups_2024-Update
Seita.7G165500.1 No alias Unknown function 0.03 Orthogroups_2024-Update
Seita.7G293800.1 No alias RNA editing factor *(REME2/PGL1) 0.02 Orthogroups_2024-Update
Seita.9G341000.1 No alias RNA editing factor *(MEF25) 0.03 Orthogroups_2024-Update
Sobic.001G069300.2 No alias RNA editing factor *(DEK36) 0.02 Orthogroups_2024-Update
Sobic.001G149100.1 No alias Unknown function 0.04 Orthogroups_2024-Update
Sobic.001G212200.1 No alias Unknown function 0.02 Orthogroups_2024-Update
Sobic.001G478900.2 No alias Unknown function 0.02 Orthogroups_2024-Update
Sobic.002G048200.1 No alias Unknown function 0.03 Orthogroups_2024-Update
Sobic.002G111700.6 No alias Unknown function 0.02 Orthogroups_2024-Update
Sobic.002G240900.1 No alias Unknown function 0.02 Orthogroups_2024-Update
Sobic.002G292300.2 No alias Unknown function 0.03 Orthogroups_2024-Update
Sobic.003G047400.1 No alias RNA editing factor *(OTP81) 0.02 Orthogroups_2024-Update
Sobic.003G239000.1 No alias RNA editing factor *(MEF1) 0.03 Orthogroups_2024-Update
Sobic.003G277100.1 No alias Unknown function 0.02 Orthogroups_2024-Update
Sobic.003G333200.1 No alias Unknown function 0.03 Orthogroups_2024-Update
Sobic.003G398900.1 No alias Unknown function 0.03 Orthogroups_2024-Update
Sobic.004G051600.1 No alias Unknown function 0.02 Orthogroups_2024-Update
Sobic.004G053100.1 No alias Unknown function 0.03 Orthogroups_2024-Update
Sobic.004G199400.1 No alias Unknown function 0.04 Orthogroups_2024-Update
Sobic.004G217900.2 No alias Unknown function 0.03 Orthogroups_2024-Update
Sobic.004G312000.1 No alias RNA editing factor *(CLB19) 0.04 Orthogroups_2024-Update
Sobic.005G210700.1 No alias Unknown function 0.03 Orthogroups_2024-Update
Sobic.006G069100.3 No alias Unknown function 0.03 Orthogroups_2024-Update
Sobic.006G146400.4 No alias RNA editing factor *(MEF12) 0.03 Orthogroups_2024-Update
Sobic.006G146900.1 No alias Unknown function 0.02 Orthogroups_2024-Update
Sobic.007G006800.3 No alias Unknown function 0.02 Orthogroups_2024-Update
Sobic.008G009000.1 No alias Unknown function 0.03 Orthogroups_2024-Update
Sobic.008G066900.1 No alias Unknown function 0.02 Orthogroups_2024-Update
Sobic.009G116400.4 No alias Unknown function 0.03 Orthogroups_2024-Update
Sobic.009G136200.1 No alias RNA editing factor *(MEF32) 0.02 Orthogroups_2024-Update
Sobic.009G155400.3 No alias Unknown function 0.02 Orthogroups_2024-Update
Sobic.009G238700.1 No alias Unknown function 0.03 Orthogroups_2024-Update
Sobic.010G190900.1 No alias Unknown function 0.03 Orthogroups_2024-Update
Solyc01g006920 No alias Pentatricopeptide repeat-containing protein (AHRD V3.3... 0.06 Orthogroups_2024-Update
Solyc01g020340 No alias Pentatricopeptide repeat-containing protein (AHRD V3.3... 0.05 Orthogroups_2024-Update
Solyc01g081290 No alias Pentatricopeptide repeat-containing protein (AHRD V3.3... 0.04 Orthogroups_2024-Update
Solyc01g081560 No alias LOW QUALITY:Pentatricopeptide repeat-containing protein... 0.05 Orthogroups_2024-Update
Solyc01g094850 No alias Pentatricopeptide repeat superfamily protein, putative... 0.05 Orthogroups_2024-Update
Solyc01g095160 No alias Pentatricopeptide repeat (PPR) superfamily protein (AHRD... 0.03 Orthogroups_2024-Update
Solyc01g097670 No alias Pentatricopeptide repeat-containing protein (AHRD V3.3... 0.03 Orthogroups_2024-Update
Solyc01g100800 No alias Pentatricopeptide repeat-containing family protein (AHRD... 0.05 Orthogroups_2024-Update
Solyc01g110010 No alias Pentatricopeptide repeat-containing protein (AHRD V3.3... 0.03 Orthogroups_2024-Update
Solyc01g112200 No alias Pentatricopeptide repeat-containing family protein (AHRD... 0.03 Orthogroups_2024-Update
Solyc02g088650 No alias Pentatricopeptide repeat-containing protein (AHRD V3.3... 0.06 Orthogroups_2024-Update
Solyc03g007840 No alias Pentatricopeptide repeat-containing protein, putative... 0.04 Orthogroups_2024-Update
Solyc03g051780 No alias Pectin lyase-like superfamily protein (AHRD V3.3 *** AT3G57790.2) 0.05 Orthogroups_2024-Update
Solyc03g063690 No alias Pentatricopeptide repeat-containing protein (AHRD V3.3... 0.07 Orthogroups_2024-Update
Solyc03g093630 No alias Pentatricopeptide repeat-containing protein (AHRD V3.3... 0.03 Orthogroups_2024-Update
Solyc03g097850 No alias Pentatricopeptide repeat-containing protein (AHRD V3.3... 0.06 Orthogroups_2024-Update
Solyc03g116000 No alias Pentatricopeptide repeat-containing protein (AHRD V3.3... 0.03 Orthogroups_2024-Update
Solyc04g016540 No alias Pentatricopeptide repeat-containing protein (AHRD V3.3... 0.04 Orthogroups_2024-Update
Solyc04g051480 No alias Pentatricopeptide repeat-containing protein (AHRD V3.3... 0.03 Orthogroups_2024-Update
Solyc04g064750 No alias Pentatricopeptide repeat superfamily protein (AHRD V3.3... 0.05 Orthogroups_2024-Update
Solyc04g082870 No alias Pentatricopeptide repeat-containing protein (AHRD V3.3... 0.03 Orthogroups_2024-Update
Solyc05g006800 No alias Pentatricopeptide repeat-containing protein (AHRD V3.3... 0.06 Orthogroups_2024-Update
Solyc06g066080 No alias Pentatricopeptide repeat-containing protein (AHRD V3.3... 0.07 Orthogroups_2024-Update
Solyc06g084580 No alias Pentatricopeptide repeat-containing protein family (AHRD... 0.02 Orthogroups_2024-Update
Solyc07g042760 No alias Pentatricopeptide repeat-containing protein (AHRD V3.3... 0.04 Orthogroups_2024-Update
Solyc07g055310 No alias Pentatricopeptide repeat-containing protein (AHRD V3.3... 0.04 Orthogroups_2024-Update
Solyc09g009950 No alias Pentatricopeptide repeat-containing protein (AHRD V3.3... 0.08 Orthogroups_2024-Update
Solyc09g010070 No alias Pentatricopeptide repeat superfamily protein (AHRD V3.3... 0.03 Orthogroups_2024-Update
Solyc10g008570 No alias Pentatricopeptide repeat-containing protein (AHRD V3.3... 0.04 Orthogroups_2024-Update
Solyc10g008590 No alias Pentatricopeptide repeat-containing protein, putative... 0.03 Orthogroups_2024-Update
Solyc10g080220 No alias Pentatricopeptide repeat superfamily protein (AHRD V3.3... 0.04 Orthogroups_2024-Update
Solyc11g005970 No alias Pentatricopeptide repeat-containing protein (AHRD V3.3... 0.03 Orthogroups_2024-Update
Solyc11g006700 No alias Pentatricopeptide repeat-containing protein (AHRD V3.3... 0.07 Orthogroups_2024-Update
Solyc11g011860 No alias Pentatricopeptide repeat-containing protein family (AHRD... 0.04 Orthogroups_2024-Update
Solyc11g067210 No alias Pentatricopeptide repeat-containing protein (AHRD V3.3... 0.06 Orthogroups_2024-Update
Solyc11g071370 No alias Pentatricopeptide repeat-containing family protein (AHRD... 0.07 Orthogroups_2024-Update
Solyc12g042400 No alias Pentatricopeptide repeat-containing protein (AHRD V3.3... 0.04 Orthogroups_2024-Update
Sopen12g021390 No alias PPR repeat 0.03 Orthogroups_2024-Update

Type GO Term Name Evidence Source

No GO annotation available for this sequence
Toggle parental
Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence
InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_repeat 73 99
IPR002885 Pentatricopeptide_repeat 101 131
IPR002885 Pentatricopeptide_repeat 174 198
IPR002885 Pentatricopeptide_repeat 1 28
IPR002885 Pentatricopeptide_repeat 375 399
IPR002885 Pentatricopeptide_repeat 300 348
IPR002885 Pentatricopeptide_repeat 199 246
No external refs found!