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  5. evm.model.contig_2121.19

evm.model.contig_2121.19


Description : (at3g05560 : 87.0) Ribosomal L22e protein family; FUNCTIONS IN: structural constituent of ribosome; INVOLVED IN: translation; LOCATED IN: cytosolic ribosome, ribosome, cytosolic large ribosomal subunit, plasma membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Ribosomal protein L22e (InterPro:IPR002671); BEST Arabidopsis thaliana protein match is: Ribosomal L22e protein family (TAIR:AT5G27770.1); Has 686 Blast hits to 686 proteins in 236 species: Archae - 0; Bacteria - 0; Metazoa - 333; Fungi - 136; Plants - 114; Viruses - 0; Other Eukaryotes - 103 (source: NCBI BLink). & (reliability: 174.0) & (original description: no original description)


Gene families : OG_42_0001702 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0001702_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Porphyridium release: evm.model.contig_2121.19
Cluster HCCA clusters: Cluster_25

Target Alias Description ECC score Gene Family Method Actions
270704 No alias Ribosomal L22e protein family 0.27 Orthogroups_2024-Update
A4A49_00389 No alias 60s ribosomal protein l22-2 0.19 Orthogroups_2024-Update
A4A49_12264 No alias 60s ribosomal protein l22-2 0.04 Orthogroups_2024-Update
At3g05560 No alias 60S ribosomal protein L22-2... 0.11 Orthogroups_2024-Update
Bradi1g18010 No alias Ribosomal L22e protein family 0.05 Orthogroups_2024-Update
Bradi1g62830 No alias Ribosomal L22e protein family 0.07 Orthogroups_2024-Update
Brara.A03699.1 No alias component *(eL22) of large ribosomal-subunit (LSU) proteome 0.1 Orthogroups_2024-Update
Brara.C03109.1 No alias component *(eL22) of large ribosomal-subunit (LSU) proteome 0.16 Orthogroups_2024-Update
Brara.E03358.1 No alias component *(eL22) of large ribosomal-subunit (LSU) proteome 0.41 Orthogroups_2024-Update
Brara.F02844.1 No alias component *(eL22) of large ribosomal-subunit (LSU) proteome 0.24 Orthogroups_2024-Update
Cre07.g357850 No alias Ribosomal L22e protein family 0.34 Orthogroups_2024-Update
GRMZM2G063617 No alias Ribosomal L22e protein family 0.12 Orthogroups_2024-Update
GRMZM2G134107 No alias Ribosomal L22e protein family 0.1 Orthogroups_2024-Update
Glyma.02G017800 No alias Ribosomal L22e protein family 0.16 Orthogroups_2024-Update
Glyma.03G235000 No alias Ribosomal L22e protein family 0.04 Orthogroups_2024-Update
Glyma.10G018200 No alias Ribosomal L22e protein family 0.18 Orthogroups_2024-Update
Glyma.19G232700 No alias Ribosomal L22e protein family 0.12 Orthogroups_2024-Update
Glyma.20G237000 No alias Ribosomal L22e protein family 0.12 Orthogroups_2024-Update
HORVU2Hr1G019160.1 No alias component *(eL22) of large ribosomal-subunit (LSU) proteome 0.15 Orthogroups_2024-Update
HORVU7Hr1G080630.1 No alias component *(eL22) of large ribosomal-subunit (LSU) proteome 0.15 Orthogroups_2024-Update
Kfl00104_0130 kfl00104_0130_v1.1 (at5g27770 : 144.0) Ribosomal L22e protein family;... 0.1 Orthogroups_2024-Update
LOC_Os03g22340 No alias 60S ribosomal protein L22-2, putative, expressed 0.05 Orthogroups_2024-Update
LOC_Os07g47710 No alias 60S ribosomal protein L22-2, putative, expressed 0.03 Orthogroups_2024-Update
Mp4g02920.1 No alias component RPL22 of LSU proteome component 0.05 Orthogroups_2024-Update
PSME_00024504-RA No alias (at3g05560 : 145.0) Ribosomal L22e protein family;... 0.09 Orthogroups_2024-Update
Potri.005G024400 No alias Ribosomal L22e protein family 0.07 Orthogroups_2024-Update
Potri.010G012700 No alias Ribosomal L22e protein family 0.18 Orthogroups_2024-Update
Potri.013G015300 No alias Ribosomal L22e protein family 0.11 Orthogroups_2024-Update
Potri.014G128800 No alias Ribosomal L22e protein family 0.11 Orthogroups_2024-Update
Pp1s180_116V6 No alias 60s ribosomal protein 0.03 Orthogroups_2024-Update
Pp1s283_20V6 No alias 60s ribosomal protein 0.22 Orthogroups_2024-Update
Pp1s39_76V6 No alias 60s ribosomal protein 0.05 Orthogroups_2024-Update
Pp1s457_15V6 No alias 60s ribosomal protein 0.26 Orthogroups_2024-Update
Seita.2G429500.1 No alias component *(eL22) of large ribosomal-subunit (LSU) proteome 0.24 Orthogroups_2024-Update
Seita.9G409100.1 No alias component *(eL22) of large ribosomal-subunit (LSU) proteome 0.32 Orthogroups_2024-Update
Sobic.001G376600.1 No alias component *(eL22) of large ribosomal-subunit (LSU) proteome 0.34 Orthogroups_2024-Update
Sobic.002G414700.1 No alias component *(eL22) of large ribosomal-subunit (LSU) proteome 0.31 Orthogroups_2024-Update
Solyc01g099830 No alias 60S ribosomal protein L22-2 (AHRD V3.3 *** W9QTY3_9ROSA) 0.29 Orthogroups_2024-Update
Solyc09g075150 No alias 60S ribosomal protein L22-2 (AHRD V3.3 *** RL222_ARATH) 0.16 Orthogroups_2024-Update
Solyc09g075160 No alias 60S ribosomal protein L22-2 (AHRD V3.3 *** RL222_ARATH) 0.1 Orthogroups_2024-Update
Sopen01g043340 No alias Ribosomal L22e protein family 0.33 Orthogroups_2024-Update
Sopen09g029970 No alias Ribosomal L22e protein family 0.12 Orthogroups_2024-Update
Sopen09g029980 No alias Ribosomal L22e protein family 0.17 Orthogroups_2024-Update
evm.model.tig00001206.7 No alias (at3g05560 : 112.0) Ribosomal L22e protein family;... 0.21 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0003735 structural constituent of ribosome IEA InterProScan predictions
CC GO:0005622 intracellular IEA InterProScan predictions
CC GO:0005840 ribosome IEA InterProScan predictions
BP GO:0006412 translation IEA InterProScan predictions
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Type GO Term Name Evidence Source
MF GO:0000049 tRNA binding IEP Predicted GO
MF GO:0003723 RNA binding IEP Predicted GO
MF GO:0019843 rRNA binding IEP Predicted GO
InterPro domains Description Start Stop
IPR002671 Ribosomal_L22e 12 119
No external refs found!