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  5. Sopen01g006390

Sopen01g006390


Description : Pectate lyase


Gene families : OG_42_0000086 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000086_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Solanum release: Sopen01g006390
Cluster HCCA clusters: Cluster_213

Target Alias Description ECC score Gene Family Method Actions
A4A49_12542 No alias pectate lyase 0.02 Orthogroups_2024-Update
At1g30350 No alias Probable pectate lyase 4 [Source:UniProtKB/Swiss-Prot;Acc:Q9C8G4] 0.03 Orthogroups_2024-Update
At3g01270 No alias Pectate lyase [Source:UniProtKB/TrEMBL;Acc:Q08A70] 0.03 Orthogroups_2024-Update
At5g48900 No alias Probable pectate lyase 20... 0.03 Orthogroups_2024-Update
Brara.B01740.1 No alias pectate lyase & EC_4.2 carbon-oxygen lyase 0.03 Orthogroups_2024-Update
GRMZM2G323418 No alias Pectate lyase family protein 0.02 Orthogroups_2024-Update
Glyma.01G042700 No alias Pectate lyase family protein 0.03 Orthogroups_2024-Update
Glyma.13G145900 No alias Pectin lyase-like superfamily protein 0.03 Orthogroups_2024-Update
Glyma.17G126500 No alias Pectin lyase-like superfamily protein 0.02 Orthogroups_2024-Update
Glyma.18G175300 No alias Pectin lyase-like superfamily protein 0.04 Orthogroups_2024-Update
Glyma.19G020200 No alias Pectate lyase family protein 0.03 Orthogroups_2024-Update
MA_101171g0010 No alias (at1g67750 : 487.0) Pectate lyase family protein;... 0.02 Orthogroups_2024-Update
MA_10437227g0010 No alias (at4g24780 : 367.0) Pectin lyase-like superfamily... 0.03 Orthogroups_2024-Update
MA_203992g0010 No alias (at4g24780 : 544.0) Pectin lyase-like superfamily... 0.02 Orthogroups_2024-Update
PSME_00000524-RA No alias (at4g24780 : 590.0) Pectin lyase-like superfamily... 0.04 Orthogroups_2024-Update
PSME_00019824-RA No alias (at1g67750 : 587.0) Pectate lyase family protein;... 0.02 Orthogroups_2024-Update
PSME_00046555-RA No alias (at4g24780 : 518.0) Pectin lyase-like superfamily... 0.04 Orthogroups_2024-Update
Potri.015G064700 No alias Pectate lyase family protein 0.05 Orthogroups_2024-Update
Pp1s355_16V6 No alias pectate lyase 0.02 Orthogroups_2024-Update
Solyc02g080910 No alias Pectate lyase (AHRD V3.3 *** K4B9W1_SOLLC) 0.02 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0030570 pectate lyase activity IEA InterProScan predictions
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Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence
InterPro domains Description Start Stop
IPR002022 Pec_lyase 170 354
IPR007524 Pec_lyase_N 28 79
No external refs found!