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  5. Sopen01g006590

Sopen01g006590


Description : Reverse transcriptase (RNA-dependent DNA polymerase)


Gene families : OG_42_0000008 (Orthogroups_2024-Update) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Solanum release: Sopen01g006590
Cluster HCCA clusters: Cluster_61

Target Alias Description ECC score Gene Family Method Actions
A4A49_29852 No alias abc transporter c family member 2 0.03 Orthogroups_2024-Update
Cre03.g183950 No alias cysteine-rich RLK (RECEPTOR-like protein kinase) 8 0.01 Orthogroups_2024-Update
LOC_Os01g37610 No alias retrotransposon protein, putative, unclassified, expressed 0.03 Orthogroups_2024-Update
LOC_Os08g30360 No alias retrotransposon protein, putative, Ty1-copia subclass 0.02 Orthogroups_2024-Update
Solyc03g043680 No alias No description available 0.02 Orthogroups_2024-Update
Solyc04g011970 No alias No description available 0.03 Orthogroups_2024-Update
Solyc05g050260 No alias No description available 0.03 Orthogroups_2024-Update
Solyc09g015410 No alias No description available 0.03 Orthogroups_2024-Update
Sopen01g018130 No alias hypothetical protein 0.04 Orthogroups_2024-Update
Sopen02g009580 No alias Integrase core domain 0.04 Orthogroups_2024-Update
Sopen02g020410 No alias Reverse transcriptase (RNA-dependent DNA polymerase) 0.03 Orthogroups_2024-Update
Sopen04g023600 No alias Reverse transcriptase (RNA-dependent DNA polymerase) 0.03 Orthogroups_2024-Update
Sopen05g013410 No alias Integrase core domain 0.03 Orthogroups_2024-Update
Sopen05g019250 No alias Integrase core domain 0.03 Orthogroups_2024-Update
Sopen05g024980 No alias Reverse transcriptase (RNA-dependent DNA polymerase) 0.03 Orthogroups_2024-Update
Sopen06g011320 No alias Reverse transcriptase (RNA-dependent DNA polymerase) 0.03 Orthogroups_2024-Update
Sopen06g015850 No alias gag-polypeptide of LTR copia-type 0.03 Orthogroups_2024-Update
Sopen08g004660 No alias Reverse transcriptase (RNA-dependent DNA polymerase) 0.03 Orthogroups_2024-Update
Sopen09g026670 No alias Reverse transcriptase (RNA-dependent DNA polymerase) 0.03 Orthogroups_2024-Update
Sopen11g014180 No alias Reverse transcriptase (RNA-dependent DNA polymerase) 0.03 Orthogroups_2024-Update
evm.model.contig_3460.4 No alias no hits & (original description: no original description) 0.02 Orthogroups_2024-Update

Type GO Term Name Evidence Source
BP GO:0015074 DNA integration IEA InterProScan predictions
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Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence
InterPro domains Description Start Stop
IPR025724 GAG-pre-integrase_dom 397 461
IPR013103 RVT_2 839 1082
IPR001584 Integrase_cat-core 478 591
No external refs found!