Description : (at5g02820 : 500.0) Involved in the patterning and shape of leaf trichomes. Encodes the DNA topoisomerase VI SPO11-3, involved in endoreduplication; ROOT HAIRLESS 2 (RHL2); CONTAINS InterPro DOMAIN/s: Spo11/DNA topoisomerase VI, subunit A, N-terminal (InterPro:IPR013049), DNA topoisomerase VI, subunit A (InterPro:IPR004085), Spo11/DNA topoisomerase VI, subunit A (InterPro:IPR002815); BEST Arabidopsis thaliana protein match is: Spo11/DNA topoisomerase VI, subunit A protein (TAIR:AT3G13170.1); Has 936 Blast hits to 932 proteins in 314 species: Archae - 223; Bacteria - 16; Metazoa - 170; Fungi - 119; Plants - 152; Viruses - 0; Other Eukaryotes - 256 (source: NCBI BLink). & (reliability: 1000.0) & (original description: no original description)
Gene families : OG_42_0001606 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0001606_tree
Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.
Type | Description | Actions |
---|---|---|
Neighborhood | Porphyridium release: evm.model.contig_2255.5 | |
Cluster | HCCA clusters: Cluster_77 |
Target | Alias | Description | ECC score | Gene Family Method | Actions |
---|---|---|---|---|---|
At5g02820 | No alias | DNA topoisomerase 6 subunit A... | 0.02 | Orthogroups_2024-Update | |
Mp8g17500.1 | No alias | component a (SPO11) of meiotic topoisomerase-VI complex | 0.03 | Orthogroups_2024-Update | |
evm.model.tig00020902.41 | No alias | (at5g02820 : 489.0) Involved in the patterning and shape... | 0.06 | Orthogroups_2024-Update |
Type | GO Term | Name | Evidence | Source |
---|---|---|---|---|
MF | GO:0003677 | DNA binding | IEA | InterProScan predictions |
MF | GO:0003824 | catalytic activity | IEA | InterProScan predictions |
MF | GO:0005524 | ATP binding | IEA | InterProScan predictions |
CC | GO:0005694 | chromosome | IEA | InterProScan predictions |
BP | GO:0006259 | DNA metabolic process | IEA | InterProScan predictions |
Type | GO Term | Name | Evidence | Source |
---|---|---|---|---|
MF | GO:0003896 | DNA primase activity | IEP | Predicted GO |
BP | GO:0006269 | DNA replication, synthesis of RNA primer | IEP | Predicted GO |
BP | GO:0006270 | DNA replication initiation | IEP | Predicted GO |
BP | GO:0006275 | regulation of DNA replication | IEP | Predicted GO |
BP | GO:0006325 | chromatin organization | IEP | Predicted GO |
BP | GO:0006476 | protein deacetylation | IEP | Predicted GO |
BP | GO:0006650 | glycerophospholipid metabolic process | IEP | Predicted GO |
BP | GO:0016569 | covalent chromatin modification | IEP | Predicted GO |
BP | GO:0016570 | histone modification | IEP | Predicted GO |
BP | GO:0016575 | histone deacetylation | IEP | Predicted GO |
BP | GO:0030258 | lipid modification | IEP | Predicted GO |
BP | GO:0035601 | protein deacylation | IEP | Predicted GO |
BP | GO:0046486 | glycerolipid metabolic process | IEP | Predicted GO |
BP | GO:0046488 | phosphatidylinositol metabolic process | IEP | Predicted GO |
BP | GO:0046834 | lipid phosphorylation | IEP | Predicted GO |
BP | GO:0046854 | phosphatidylinositol phosphorylation | IEP | Predicted GO |
BP | GO:0051052 | regulation of DNA metabolic process | IEP | Predicted GO |
BP | GO:0098732 | macromolecule deacylation | IEP | Predicted GO |
InterPro domains | Description | Start | Stop |
---|---|---|---|
IPR013049 | Spo11/TopoVI_A_N | 123 | 184 |
No external refs found! |