Description : (at3g03920 : 89.7) H/ACA ribonucleoprotein complex, subunit Gar1/Naf1 protein; FUNCTIONS IN: snoRNA binding, pseudouridine synthase activity, RNA binding; LOCATED IN: chloroplast thylakoid membrane, nucleolus; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: H/ACA ribonucleoprotein complex, subunit Gar1, eukaryote (InterPro:IPR021154), H/ACA ribonucleoprotein complex, subunit Gar1/Naf1 (InterPro:IPR007504); BEST Arabidopsis thaliana protein match is: H/ACA ribonucleoprotein complex, subunit Gar1/Naf1 protein (TAIR:AT5G18180.1); Has 27180 Blast hits to 8695 proteins in 812 species: Archae - 17; Bacteria - 4971; Metazoa - 11125; Fungi - 2086; Plants - 5744; Viruses - 428; Other Eukaryotes - 2809 (source: NCBI BLink). & (reliability: 179.4) & (original description: no original description)
Gene families : OG_42_0004887 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0004887_tree
Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.
Type | Description | Actions |
---|---|---|
Neighborhood | Porphyridium release: evm.model.contig_2273.24 | |
Cluster | HCCA clusters: Cluster_57 |
Target | Alias | Description | ECC score | Gene Family Method | Actions |
---|---|---|---|---|---|
Cre13.g567850 | No alias | H/ACA ribonucleoprotein complex, subunit Gar1/Naf1 protein | 0.02 | Orthogroups_2024-Update | |
LOC_Os11g37080 | No alias | h/ACA ribonucleoprotein complex subunit 1-like protein... | 0.03 | Orthogroups_2024-Update | |
PSME_00026474-RA | No alias | (at3g03920 : 112.0) H/ACA ribonucleoprotein complex,... | 0.01 | Orthogroups_2024-Update | |
Solyc10g078540 | No alias | H/ACA ribonucleoprotein complex subunit 1-like protein... | 0.02 | Orthogroups_2024-Update |
Type | GO Term | Name | Evidence | Source |
---|---|---|---|---|
BP | GO:0001522 | pseudouridine synthesis | IEA | InterProScan predictions |
BP | GO:0042254 | ribosome biogenesis | IEA | InterProScan predictions |
Type | GO Term | Name | Evidence | Source |
---|---|---|---|---|
MF | GO:0000166 | nucleotide binding | IEP | Predicted GO |
BP | GO:0001510 | RNA methylation | IEP | Predicted GO |
MF | GO:0003674 | molecular_function | IEP | Predicted GO |
MF | GO:0003824 | catalytic activity | IEP | Predicted GO |
MF | GO:0003968 | RNA-directed 5'-3' RNA polymerase activity | IEP | Predicted GO |
MF | GO:0004743 | pyruvate kinase activity | IEP | Predicted GO |
MF | GO:0004813 | alanine-tRNA ligase activity | IEP | Predicted GO |
MF | GO:0004814 | arginine-tRNA ligase activity | IEP | Predicted GO |
MF | GO:0005524 | ATP binding | IEP | Predicted GO |
BP | GO:0006399 | tRNA metabolic process | IEP | Predicted GO |
BP | GO:0006400 | tRNA modification | IEP | Predicted GO |
BP | GO:0006419 | alanyl-tRNA aminoacylation | IEP | Predicted GO |
BP | GO:0006420 | arginyl-tRNA aminoacylation | IEP | Predicted GO |
BP | GO:0008033 | tRNA processing | IEP | Predicted GO |
MF | GO:0008175 | tRNA methyltransferase activity | IEP | Predicted GO |
CC | GO:0016020 | membrane | IEP | Predicted GO |
MF | GO:0016426 | tRNA (adenine) methyltransferase activity | IEP | Predicted GO |
MF | GO:0016429 | tRNA (adenine-N1-)-methyltransferase activity | IEP | Predicted GO |
MF | GO:0016462 | pyrophosphatase activity | IEP | Predicted GO |
MF | GO:0016742 | hydroxymethyl-, formyl- and related transferase activity | IEP | Predicted GO |
MF | GO:0016787 | hydrolase activity | IEP | Predicted GO |
MF | GO:0016817 | hydrolase activity, acting on acid anhydrides | IEP | Predicted GO |
MF | GO:0016818 | hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides | IEP | Predicted GO |
MF | GO:0016840 | carbon-nitrogen lyase activity | IEP | Predicted GO |
MF | GO:0016843 | amine-lyase activity | IEP | Predicted GO |
MF | GO:0016844 | strictosidine synthase activity | IEP | Predicted GO |
MF | GO:0017056 | structural constituent of nuclear pore | IEP | Predicted GO |
MF | GO:0017076 | purine nucleotide binding | IEP | Predicted GO |
MF | GO:0017111 | nucleoside-triphosphatase activity | IEP | Predicted GO |
CC | GO:0019867 | outer membrane | IEP | Predicted GO |
BP | GO:0030488 | tRNA methylation | IEP | Predicted GO |
MF | GO:0030554 | adenyl nucleotide binding | IEP | Predicted GO |
MF | GO:0030955 | potassium ion binding | IEP | Predicted GO |
MF | GO:0031420 | alkali metal ion binding | IEP | Predicted GO |
CC | GO:0031515 | tRNA (m1A) methyltransferase complex | IEP | Predicted GO |
MF | GO:0032553 | ribonucleotide binding | IEP | Predicted GO |
MF | GO:0032555 | purine ribonucleotide binding | IEP | Predicted GO |
MF | GO:0032559 | adenyl ribonucleotide binding | IEP | Predicted GO |
MF | GO:0034062 | 5'-3' RNA polymerase activity | IEP | Predicted GO |
BP | GO:0034660 | ncRNA metabolic process | IEP | Predicted GO |
CC | GO:0034708 | methyltransferase complex | IEP | Predicted GO |
MF | GO:0035639 | purine ribonucleoside triphosphate binding | IEP | Predicted GO |
MF | GO:0036094 | small molecule binding | IEP | Predicted GO |
BP | GO:0042126 | nitrate metabolic process | IEP | Predicted GO |
BP | GO:0042128 | nitrate assimilation | IEP | Predicted GO |
MF | GO:0043167 | ion binding | IEP | Predicted GO |
MF | GO:0043168 | anion binding | IEP | Predicted GO |
CC | GO:0043527 | tRNA methyltransferase complex | IEP | Predicted GO |
MF | GO:0097367 | carbohydrate derivative binding | IEP | Predicted GO |
MF | GO:0097747 | RNA polymerase activity | IEP | Predicted GO |
MF | GO:0140098 | catalytic activity, acting on RNA | IEP | Predicted GO |
MF | GO:0140101 | catalytic activity, acting on a tRNA | IEP | Predicted GO |
MF | GO:1901265 | nucleoside phosphate binding | IEP | Predicted GO |
BP | GO:2001057 | reactive nitrogen species metabolic process | IEP | Predicted GO |
InterPro domains | Description | Start | Stop |
---|---|---|---|
IPR007504 | H/ACA_rnp_Gar1/Naf1 | 1 | 84 |
No external refs found! |