1. Home
  2. Species
  3. Porphyridium purpureum
  4. Sequence
  5. evm.model.contig_2280.3

evm.model.contig_2280.3


Description : (at2g23780 : 127.0) RING/U-box superfamily protein; FUNCTIONS IN: zinc ion binding; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type, conserved site (InterPro:IPR017907), Zinc finger, RING-type (InterPro:IPR001841), Zinc finger, C3HC4 RING-type (InterPro:IPR018957); BEST Arabidopsis thaliana protein match is: RING/U-box superfamily protein (TAIR:AT1G19310.1); Has 3846 Blast hits to 3838 proteins in 274 species: Archae - 0; Bacteria - 0; Metazoa - 2175; Fungi - 493; Plants - 714; Viruses - 21; Other Eukaryotes - 443 (source: NCBI BLink). & (reliability: 254.0) & (original description: no original description)


Gene families : OG_42_0000548 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000548_tree

Sequence : coding (download), protein (download)


Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Porphyridium release: evm.model.contig_2280.3
Cluster HCCA clusters: Cluster_21

Target Alias Description ECC score Gene Family Method Actions
Sobic.004G228100.2 No alias E3 ubiquitin ligase *(RMA/MUSE) 0.01 Orthogroups_2024-Update
evm.model.tig00001331.4 No alias (at1g19310 : 110.0) RING/U-box superfamily protein;... 0.01 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0046872 metal ion binding IEA InterProScan predictions
Toggle parental
Type GO Term Name Evidence Source
CC GO:0000814 ESCRT II complex IEP Predicted GO
MF GO:0003852 2-isopropylmalate synthase activity IEP Predicted GO
MF GO:0004357 glutamate-cysteine ligase activity IEP Predicted GO
MF GO:0004512 inositol-3-phosphate synthase activity IEP Predicted GO
BP GO:0006020 inositol metabolic process IEP Predicted GO
BP GO:0006021 inositol biosynthetic process IEP Predicted GO
BP GO:0006551 leucine metabolic process IEP Predicted GO
BP GO:0006749 glutathione metabolic process IEP Predicted GO
BP GO:0006750 glutathione biosynthetic process IEP Predicted GO
BP GO:0006835 dicarboxylic acid transport IEP Predicted GO
BP GO:0009081 branched-chain amino acid metabolic process IEP Predicted GO
BP GO:0009082 branched-chain amino acid biosynthetic process IEP Predicted GO
BP GO:0009098 leucine biosynthetic process IEP Predicted GO
BP GO:0015740 C4-dicarboxylate transport IEP Predicted GO
BP GO:0015743 malate transport IEP Predicted GO
BP GO:0015849 organic acid transport IEP Predicted GO
MF GO:0016872 intramolecular lyase activity IEP Predicted GO
MF GO:0016881 acid-amino acid ligase activity IEP Predicted GO
BP GO:0019184 nonribosomal peptide biosynthetic process IEP Predicted GO
CC GO:0036452 ESCRT complex IEP Predicted GO
CC GO:0044440 endosomal part IEP Predicted GO
BP GO:0046165 alcohol biosynthetic process IEP Predicted GO
BP GO:0046173 polyol biosynthetic process IEP Predicted GO
BP GO:0046942 carboxylic acid transport IEP Predicted GO
BP GO:0071985 multivesicular body sorting pathway IEP Predicted GO
InterPro domains Description Start Stop
IPR018957 Znf_C3HC4_RING-type 94 143
No external refs found!