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evm.model.contig_2290.1


Description : (gnl|cdd|68872 : 94.0) no description available & (p41040|calm_maize : 82.8) Calmodulin (CaM) - Zea mays (Maize) & (at5g37780 : 80.9) encodes a calmodulin that is involved in thigmomorphogenesis. Gene expression is rapidly induced upon a variety of abiotic stimuli, including water spray, subirrigation, wind, touch, wounding, or darkness.; calmodulin 1 (CAM1); CONTAINS InterPro DOMAIN/s: EF-Hand 1, calcium-binding site (InterPro:IPR018247), EF-HAND 2 (InterPro:IPR018249), EF-hand-like domain (InterPro:IPR011992), Calcium-binding EF-hand (InterPro:IPR002048), EF-hand (InterPro:IPR018248); BEST Arabidopsis thaliana protein match is: calmodulin 4 (TAIR:AT1G66410.1); Has 29914 Blast hits to 22079 proteins in 1723 species: Archae - 3; Bacteria - 127; Metazoa - 13080; Fungi - 6590; Plants - 6083; Viruses - 0; Other Eukaryotes - 4031 (source: NCBI BLink). & (reliability: 161.8) & (original description: no original description)


Gene families : OG_42_0000644 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000644_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Porphyridium release: evm.model.contig_2290.1
Cluster HCCA clusters: Cluster_60

Target Alias Description ECC score Gene Family Method Actions
Brara.I03055.1 No alias calcium sensor *(CML) 0.02 Orthogroups_2024-Update
Glyma.05G085200 No alias Calcium-binding EF-hand family protein 0.02 Orthogroups_2024-Update
Mp5g15820.1 No alias Probable calcium-binding protein CML10 OS=Oryza sativa... 0.02 Orthogroups_2024-Update
PSME_00046736-RA No alias (at1g24620 : 146.0) EF hand calcium-binding protein... 0.02 Orthogroups_2024-Update
Potri.009G102500 No alias Calcium-binding EF-hand family protein 0.02 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0005509 calcium ion binding IEA InterProScan predictions
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Type GO Term Name Evidence Source
MF GO:0003779 actin binding IEP Predicted GO
MF GO:0003887 DNA-directed DNA polymerase activity IEP Predicted GO
BP GO:0006810 transport IEP Predicted GO
BP GO:0007010 cytoskeleton organization IEP Predicted GO
CC GO:0016021 integral component of membrane IEP Predicted GO
MF GO:0016835 carbon-oxygen lyase activity IEP Predicted GO
MF GO:0016836 hydro-lyase activity IEP Predicted GO
CC GO:0031224 intrinsic component of membrane IEP Predicted GO
MF GO:0034061 DNA polymerase activity IEP Predicted GO
BP GO:0051179 localization IEP Predicted GO
BP GO:0051234 establishment of localization IEP Predicted GO
BP GO:0055085 transmembrane transport IEP Predicted GO
InterPro domains Description Start Stop
IPR002048 EF_hand_dom 566 609
IPR002048 EF_hand_dom 634 657
No external refs found!