evm.model.contig_2297.1

Description : (p09447|psbb_secce : 447.0) Photosystem II P680 chlorophyll A apoprotein (CP-47 protein) - Secale cereale (Rye) & (atcg00680 : 443.0) encodes for CP47, subunit of the photosystem II reaction center.; photosystem II reaction center protein B (PSBB); FUNCTIONS IN: chlorophyll binding; INVOLVED IN: photosynthesis, light reaction, photosystem II assembly; LOCATED IN: in 6 components; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Photosystem antenna protein-like (InterPro:IPR000932), Photosystem II, PsbB (InterPro:IPR017486); BEST Arabidopsis thaliana protein match is: photosystem II reaction center protein C (TAIR:ATCG00280.1). & (reliability: 886.0) & (original description: no original description)

Gene families : OG_42_0002336 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0002336_tree

Sequence : coding (download), protein (download)

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	Porphyridium release: evm.model.contig_2297.1
Cluster	HCCA clusters: Cluster_40

Target	Alias	Description	ECC score	Gene Family Method
137729	No alias	photosystem II reaction center protein B	0.03	Orthogroups_2024-Update
Bradi1g05740	No alias	photosystem II reaction center protein B	0.04	Orthogroups_2024-Update
Bradi5g09702	No alias	photosystem II reaction center protein B	0.04	Orthogroups_2024-Update
Brara.E02421.1	No alias	Unknown function	0.06	Orthogroups_2024-Update
GRMZM5G808939	No alias	photosystem II reaction center protein B	0.02	Orthogroups_2024-Update
HORVU5Hr1G065050.3	No alias	component *(PsbB/CP47) of PS-II reaction center complex	0.02	Orthogroups_2024-Update
LOC_Os06g39708	No alias	photosystem II P680 chlorophyll A apoprotein, putative, expressed	0.04	Orthogroups_2024-Update
LOC_Os10g21310	No alias	photosystem II P680 chlorophyll A apoprotein, putative, expressed	0.03	Orthogroups_2024-Update
Mpzg01020.1	No alias	component PsbB/CP47 of PS-II reaction center complex	0.02	Orthogroups_2024-Update
PSME_00000999-RA	No alias	(p41624\|psbb_pinth : 441.0) Photosystem II P680...	0.02	Orthogroups_2024-Update
PSME_00001743-RA	No alias	(p41624\|psbb_pinth : 223.0) Photosystem II P680...	0.02	Orthogroups_2024-Update
PSME_00047959-RA	No alias	(p41624\|psbb_pinth : 521.0) Photosystem II P680...	0.02	Orthogroups_2024-Update
Seita.J014000.1	No alias	Unknown function	0.02	Orthogroups_2024-Update
Sobic.003G169100.1	No alias	component *(PsbB/CP47) of PS-II reaction center complex	0.03	Orthogroups_2024-Update
Sobic.003G172200.1	No alias	Unknown function	0.04	Orthogroups_2024-Update
Solyc01g007500	No alias	No description available	0.02	Orthogroups_2024-Update
Sopen05g017070	No alias	Photosystem II protein	0.03	Orthogroups_2024-Update

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0005488	binding	None	Extended
CC	GO:0005575	cellular_component	None	Extended
BP	GO:0006091	generation of precursor metabolites and energy	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
CC	GO:0009521	photosystem	IEA	InterProScan predictions
BP	GO:0009767	photosynthetic electron transport chain	IEA	InterProScan predictions
BP	GO:0009987	cellular process	None	Extended
CC	GO:0016020	membrane	IEA	InterProScan predictions
MF	GO:0016168	chlorophyll binding	IEA	InterProScan predictions
BP	GO:0019684	photosynthesis, light reaction	IEA	InterProScan predictions
BP	GO:0022900	electron transport chain	None	Extended
CC	GO:0032991	protein-containing complex	None	Extended
MF	GO:0043167	ion binding	None	Extended
MF	GO:0043168	anion binding	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
CC	GO:0044424	intracellular part	None	Extended
CC	GO:0044425	membrane part	None	Extended
CC	GO:0044436	thylakoid part	None	Extended
CC	GO:0044464	cell part	None	Extended
MF	GO:0046906	tetrapyrrole binding	None	Extended
MF	GO:0048037	cofactor binding	None	Extended
BP	GO:0055114	oxidation-reduction process	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
CC	GO:0098796	membrane protein complex	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended

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Type	GO Term	Name	Evidence	Source
MF	GO:0003899	DNA-directed 5'-3' RNA polymerase activity	IEP	Predicted GO
MF	GO:0004057	arginyltransferase activity	IEP	Predicted GO
BP	GO:0006139	nucleobase-containing compound metabolic process	IEP	Predicted GO
BP	GO:0006351	transcription, DNA-templated	IEP	Predicted GO
BP	GO:0006725	cellular aromatic compound metabolic process	IEP	Predicted GO
BP	GO:0006754	ATP biosynthetic process	IEP	Predicted GO
BP	GO:0009124	nucleoside monophosphate biosynthetic process	IEP	Predicted GO
BP	GO:0009127	purine nucleoside monophosphate biosynthetic process	IEP	Predicted GO
BP	GO:0009142	nucleoside triphosphate biosynthetic process	IEP	Predicted GO
BP	GO:0009144	purine nucleoside triphosphate metabolic process	IEP	Predicted GO
BP	GO:0009145	purine nucleoside triphosphate biosynthetic process	IEP	Predicted GO
BP	GO:0009156	ribonucleoside monophosphate biosynthetic process	IEP	Predicted GO
BP	GO:0009168	purine ribonucleoside monophosphate biosynthetic process	IEP	Predicted GO
BP	GO:0009199	ribonucleoside triphosphate metabolic process	IEP	Predicted GO
BP	GO:0009201	ribonucleoside triphosphate biosynthetic process	IEP	Predicted GO
BP	GO:0009205	purine ribonucleoside triphosphate metabolic process	IEP	Predicted GO
BP	GO:0009206	purine ribonucleoside triphosphate biosynthetic process	IEP	Predicted GO
BP	GO:0009772	photosynthetic electron transport in photosystem II	IEP	Predicted GO
BP	GO:0015985	energy coupled proton transport, down electrochemical gradient	IEP	Predicted GO
BP	GO:0015986	ATP synthesis coupled proton transport	IEP	Predicted GO
BP	GO:0016598	protein arginylation	IEP	Predicted GO
MF	GO:0016755	transferase activity, transferring amino-acyl groups	IEP	Predicted GO
BP	GO:0018130	heterocycle biosynthetic process	IEP	Predicted GO
BP	GO:0019438	aromatic compound biosynthetic process	IEP	Predicted GO
MF	GO:0034062	5'-3' RNA polymerase activity	IEP	Predicted GO
BP	GO:0034654	nucleobase-containing compound biosynthetic process	IEP	Predicted GO
MF	GO:0045156	electron transporter, transferring electrons within the cyclic electron transport pathway of photosynthesis activity	IEP	Predicted GO
BP	GO:0046034	ATP metabolic process	IEP	Predicted GO
BP	GO:0046483	heterocycle metabolic process	IEP	Predicted GO
BP	GO:0097659	nucleic acid-templated transcription	IEP	Predicted GO
MF	GO:0097747	RNA polymerase activity	IEP	Predicted GO
BP	GO:0098655	cation transmembrane transport	IEP	Predicted GO
BP	GO:0098660	inorganic ion transmembrane transport	IEP	Predicted GO
BP	GO:0098662	inorganic cation transmembrane transport	IEP	Predicted GO
BP	GO:1901360	organic cyclic compound metabolic process	IEP	Predicted GO
BP	GO:1901362	organic cyclic compound biosynthetic process	IEP	Predicted GO
BP	GO:1902600	proton transmembrane transport	IEP	Predicted GO

InterPro domains	Description	Start	Stop
IPR000932	PS_antenna-like	1	270

External Links

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evm.model.contig_2297.1

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation