evm.model.contig_2340.2

Description : (p49397|rs3a_orysa : 304.0) 40S ribosomal protein S3a (CYC07 protein) - Oryza sativa (Rice) & (at4g34670 : 300.0) Ribosomal protein S3Ae; FUNCTIONS IN: structural constituent of ribosome; INVOLVED IN: translation; LOCATED IN: in 6 components; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Ribosomal protein S3Ae, conserved site (InterPro:IPR018281), Ribosomal protein S3Ae (InterPro:IPR001593); BEST Arabidopsis thaliana protein match is: Ribosomal protein S3Ae (TAIR:AT3G04840.1); Has 1362 Blast hits to 1357 proteins in 408 species: Archae - 234; Bacteria - 1; Metazoa - 463; Fungi - 247; Plants - 191; Viruses - 0; Other Eukaryotes - 226 (source: NCBI BLink). & (reliability: 600.0) & (original description: no original description)

Gene families : OG_42_0001814 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0001814_tree

Sequence : coding (download), protein (download)

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	Porphyridium release: evm.model.contig_2340.2
Cluster	HCCA clusters: Cluster_25

Target	Alias	Description	ECC score	Gene Family Method
160008	No alias	Ribosomal protein S3Ae	0.01	Orthogroups_2024-Update
271906	No alias	Ribosomal protein S3Ae	0.08	Orthogroups_2024-Update
271907	No alias	Ribosomal protein S3Ae	0.06	Orthogroups_2024-Update
A4A49_56002	No alias	40s ribosomal protein s3a	0.18	Orthogroups_2024-Update
At3g04840	No alias	40S ribosomal protein S3a-1...	0.05	Orthogroups_2024-Update
Bradi1g71200	No alias	Ribosomal protein S3Ae	0.18	Orthogroups_2024-Update
Bradi1g78170	No alias	Ribosomal protein S3Ae	0.35	Orthogroups_2024-Update
Bradi3g01210	No alias	Ribosomal protein S3Ae	0.22	Orthogroups_2024-Update
Brara.A00356.1	No alias	component *(eS1) of small ribosomal-subunit (SSU) proteome	0.15	Orthogroups_2024-Update
Brara.A03750.1	No alias	component *(eS1) of small ribosomal-subunit (SSU) proteome	0.35	Orthogroups_2024-Update
Brara.C03077.1	No alias	component *(eS1) of small ribosomal-subunit (SSU) proteome	0.37	Orthogroups_2024-Update
Brara.E03419.1	No alias	component *(eS1) of small ribosomal-subunit (SSU) proteome	0.44	Orthogroups_2024-Update
Brara.H01188.1	No alias	component *(eS1) of small ribosomal-subunit (SSU) proteome	0.19	Orthogroups_2024-Update
Brara.K00335.1	No alias	component *(eS1) of small ribosomal-subunit (SSU) proteome	0.05	Orthogroups_2024-Update
Cre13.g568650	No alias	Ribosomal protein S3Ae	0.22	Orthogroups_2024-Update
GRMZM2G145258	No alias	Ribosomal protein S3Ae	0.13	Orthogroups_2024-Update
Glyma.01G236600	No alias	Ribosomal protein S3Ae	0.1	Orthogroups_2024-Update
Glyma.10G245200	No alias	Ribosomal protein S3Ae	0.17	Orthogroups_2024-Update
Glyma.11G006600	No alias	Ribosomal protein S3Ae	0.19	Orthogroups_2024-Update
Glyma.20G149400	No alias	Ribosomal protein S3Ae	0.05	Orthogroups_2024-Update
HORVU1Hr1G032060.4	No alias	component *(eS1) of small ribosomal-subunit (SSU) proteome	0.05	Orthogroups_2024-Update
HORVU4Hr1G070370.1	No alias	component *(eS1) of small ribosomal-subunit (SSU) proteome	0.26	Orthogroups_2024-Update
Kfl00143_0140	kfl00143_0140_v1.1	(p33444\|rs3a_catro : 380.0) 40S ribosomal protein S3a...	0.05	Orthogroups_2024-Update
LOC_Os03g10340	No alias	40S ribosomal protein S3a, putative, expressed	0.05	Orthogroups_2024-Update
LOC_Os12g21798	No alias	40S ribosomal protein S3a, putative, expressed	0.03	Orthogroups_2024-Update
MA_124901g0010	No alias	(at4g34670 : 410.0) Ribosomal protein S3Ae; FUNCTIONS...	0.03	Orthogroups_2024-Update
MA_31004g0010	No alias	(at4g34670 : 389.0) Ribosomal protein S3Ae; FUNCTIONS...	0.1	Orthogroups_2024-Update
Mp6g02810.1	No alias	component RPS3a of SSU proteome	0.03	Orthogroups_2024-Update
PSME_00005371-RA	No alias	(at4g34670 : 408.0) Ribosomal protein S3Ae; FUNCTIONS...	0.08	Orthogroups_2024-Update
Potri.005G051200	No alias	Ribosomal protein S3Ae	0.07	Orthogroups_2024-Update
Potri.008G156300	No alias	Ribosomal protein S3Ae	0.09	Orthogroups_2024-Update
Potri.010G083200	No alias	Ribosomal protein S3Ae	0.06	Orthogroups_2024-Update
Pp1s179_15V6	No alias	40s ribosomal protein s3a	0.24	Orthogroups_2024-Update
Pp1s17_306V6	No alias	40s ribosomal protein s3a	0.23	Orthogroups_2024-Update
Pp1s219_50V6	No alias	40s ribosomal protein s3a	0.33	Orthogroups_2024-Update
Pp1s80_113V6	No alias	40s ribosomal protein s3a	0.02	Orthogroups_2024-Update
Pp1s92_47V6	No alias	40s ribosomal protein s3a	0.02	Orthogroups_2024-Update
Seita.2G378300.1	No alias	component *(eS1) of small ribosomal-subunit (SSU) proteome	0.3	Orthogroups_2024-Update
Seita.9G502500.1	No alias	component *(eS1) of small ribosomal-subunit (SSU) proteome	0.31	Orthogroups_2024-Update
Sobic.001G467300.3	No alias	component *(eS1) of small ribosomal-subunit (SSU) proteome	0.19	Orthogroups_2024-Update
Sobic.002G364100.1	No alias	component *(eS1) of small ribosomal-subunit (SSU) proteome	0.42	Orthogroups_2024-Update
Sobic.002G364500.1	No alias	component *(eS1) of small ribosomal-subunit (SSU) proteome	0.3	Orthogroups_2024-Update
Solyc03g097900	No alias	40S ribosomal protein S3a (AHRD V3.3 *** RS3A_TOBAC)	0.02	Orthogroups_2024-Update
Solyc06g072490	No alias	40S ribosomal protein S3a (AHRD V3.3 *** RS3A_TOBAC)	0.47	Orthogroups_2024-Update
Solyc09g082520	No alias	40S ribosomal protein S3a (AHRD V3.3 *** K4CVM9_SOLLC)	0.21	Orthogroups_2024-Update
Sopen06g028860	No alias	Ribosomal S3Ae family	0.41	Orthogroups_2024-Update
Sopen09g031380	No alias	Ribosomal S3Ae family	0.11	Orthogroups_2024-Update
evm.model.tig00020710.39	No alias	(at4g34670 : 313.0) Ribosomal protein S3Ae; FUNCTIONS...	0.26	Orthogroups_2024-Update

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003735	structural constituent of ribosome	IEA	InterProScan predictions
MF	GO:0005198	structural molecule activity	None	Extended
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005840	ribosome	IEA	InterProScan predictions
BP	GO:0006412	translation	IEA	InterProScan predictions
BP	GO:0006518	peptide metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009058	biosynthetic process	None	Extended
BP	GO:0009059	macromolecule biosynthetic process	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0019538	protein metabolic process	None	Extended
CC	GO:0032991	protein-containing complex	None	Extended
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
BP	GO:0034645	cellular macromolecule biosynthetic process	None	Extended
BP	GO:0043043	peptide biosynthetic process	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
CC	GO:0043226	organelle	None	Extended
CC	GO:0043228	non-membrane-bounded organelle	None	Extended
CC	GO:0043229	intracellular organelle	None	Extended
CC	GO:0043232	intracellular non-membrane-bounded organelle	None	Extended
BP	GO:0043603	cellular amide metabolic process	None	Extended
BP	GO:0043604	amide biosynthetic process	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0044249	cellular biosynthetic process	None	Extended
BP	GO:0044260	cellular macromolecule metabolic process	None	Extended
BP	GO:0044267	cellular protein metabolic process	None	Extended
BP	GO:0044271	cellular nitrogen compound biosynthetic process	None	Extended
CC	GO:0044424	intracellular part	None	Extended
CC	GO:0044444	cytoplasmic part	None	Extended
CC	GO:0044464	cell part	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
BP	GO:1901564	organonitrogen compound metabolic process	None	Extended
BP	GO:1901566	organonitrogen compound biosynthetic process	None	Extended
BP	GO:1901576	organic substance biosynthetic process	None	Extended
CC	GO:1990904	ribonucleoprotein complex	None	Extended

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Type	GO Term	Name	Evidence	Source
MF	GO:0000774	adenyl-nucleotide exchange factor activity	IEP	Predicted GO
MF	GO:0003676	nucleic acid binding	IEP	Predicted GO
MF	GO:0003723	RNA binding	IEP	Predicted GO
MF	GO:0003746	translation elongation factor activity	IEP	Predicted GO
MF	GO:0003924	GTPase activity	IEP	Predicted GO
CC	GO:0005622	intracellular	IEP	Predicted GO
CC	GO:0005741	mitochondrial outer membrane	IEP	Predicted GO
BP	GO:0006414	translational elongation	IEP	Predicted GO
BP	GO:0006417	regulation of translation	IEP	Predicted GO
BP	GO:0006448	regulation of translational elongation	IEP	Predicted GO
BP	GO:0006449	regulation of translational termination	IEP	Predicted GO
BP	GO:0006452	translational frameshifting	IEP	Predicted GO
MF	GO:0008097	5S rRNA binding	IEP	Predicted GO
MF	GO:0008135	translation factor activity, RNA binding	IEP	Predicted GO
BP	GO:0009891	positive regulation of biosynthetic process	IEP	Predicted GO
BP	GO:0009893	positive regulation of metabolic process	IEP	Predicted GO
BP	GO:0010557	positive regulation of macromolecule biosynthetic process	IEP	Predicted GO
BP	GO:0010604	positive regulation of macromolecule metabolic process	IEP	Predicted GO
BP	GO:0010608	posttranscriptional regulation of gene expression	IEP	Predicted GO
BP	GO:0010628	positive regulation of gene expression	IEP	Predicted GO
CC	GO:0015934	large ribosomal subunit	IEP	Predicted GO
MF	GO:0019843	rRNA binding	IEP	Predicted GO
CC	GO:0019867	outer membrane	IEP	Predicted GO
BP	GO:0031325	positive regulation of cellular metabolic process	IEP	Predicted GO
BP	GO:0031328	positive regulation of cellular biosynthetic process	IEP	Predicted GO
CC	GO:0031968	organelle outer membrane	IEP	Predicted GO
BP	GO:0032270	positive regulation of cellular protein metabolic process	IEP	Predicted GO
BP	GO:0034248	regulation of cellular amide metabolic process	IEP	Predicted GO
BP	GO:0034250	positive regulation of cellular amide metabolic process	IEP	Predicted GO
MF	GO:0042802	identical protein binding	IEP	Predicted GO
MF	GO:0042803	protein homodimerization activity	IEP	Predicted GO
MF	GO:0043021	ribonucleoprotein complex binding	IEP	Predicted GO
MF	GO:0043022	ribosome binding	IEP	Predicted GO
BP	GO:0043243	positive regulation of protein complex disassembly	IEP	Predicted GO
BP	GO:0043244	regulation of protein complex disassembly	IEP	Predicted GO
CC	GO:0044391	ribosomal subunit	IEP	Predicted GO
MF	GO:0044877	protein-containing complex binding	IEP	Predicted GO
BP	GO:0045727	positive regulation of translation	IEP	Predicted GO
BP	GO:0045901	positive regulation of translational elongation	IEP	Predicted GO
BP	GO:0045905	positive regulation of translational termination	IEP	Predicted GO
BP	GO:0048518	positive regulation of biological process	IEP	Predicted GO
BP	GO:0048522	positive regulation of cellular process	IEP	Predicted GO
BP	GO:0051128	regulation of cellular component organization	IEP	Predicted GO
BP	GO:0051130	positive regulation of cellular component organization	IEP	Predicted GO
BP	GO:0051173	positive regulation of nitrogen compound metabolic process	IEP	Predicted GO
BP	GO:0051247	positive regulation of protein metabolic process	IEP	Predicted GO
MF	GO:0060590	ATPase regulator activity	IEP	Predicted GO
CC	GO:0098588	bounding membrane of organelle	IEP	Predicted GO
CC	GO:0098805	whole membrane	IEP	Predicted GO

InterPro domains	Description	Start	Stop
IPR001593	Ribosomal_S3Ae	16	221

External Links

No external refs found!

evm.model.contig_2340.2

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation