evm.model.contig_2494.11

Description : (at3g62310 : 436.0) RNA helicase family protein; FUNCTIONS IN: RNA helicase activity, helicase activity, ATP binding, nucleic acid binding, ATP-dependent helicase activity; LOCATED IN: nucleolus; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Helicase-associated domain (InterPro:IPR007502), DNA/RNA helicase, DEAD/DEAH box type, N-terminal (InterPro:IPR011545), Domain of unknown function DUF1605 (InterPro:IPR011709), DEAD-like helicase, N-terminal (InterPro:IPR014001), DNA/RNA helicase, C-terminal (InterPro:IPR001650), Helicase, superfamily 1/2, ATP-binding domain (InterPro:IPR014021); BEST Arabidopsis thaliana protein match is: RNA helicase family protein (TAIR:AT2G47250.1); Has 10517 Blast hits to 9531 proteins in 1639 species: Archae - 4; Bacteria - 3473; Metazoa - 2472; Fungi - 1291; Plants - 883; Viruses - 640; Other Eukaryotes - 1754 (source: NCBI BLink). & (reliability: 872.0) & (original description: no original description)

Gene families : OG_42_0000210 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000210_tree

Sequence : coding (download), protein (download)

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	Porphyridium release: evm.model.contig_2494.11
Cluster	HCCA clusters: Cluster_43

Target	Alias	Description	ECC score	Gene Family Method
429199	No alias	RNA helicase family protein	0.02	Orthogroups_2024-Update
Bradi1g18830	No alias	RNA helicase family protein	0.01	Orthogroups_2024-Update
Bradi1g61220	No alias	RNA helicase family protein	0.01	Orthogroups_2024-Update
Bradi2g06800	No alias	RNA helicase family protein	0.02	Orthogroups_2024-Update
Brara.B00468.1	No alias	RNA helicase *(Prp16)	0.02	Orthogroups_2024-Update
Cre08.g358563	No alias	ATP-dependent RNA helicase, putative	0.03	Orthogroups_2024-Update
Cre12.g520150	No alias	RNA helicase family protein	0.01	Orthogroups_2024-Update
GRMZM2G029258	No alias	ATP-dependent RNA helicase, putative	0.02	Orthogroups_2024-Update
GRMZM2G305060	No alias	RNA helicase family protein	0.02	Orthogroups_2024-Update
Glyma.03G221200	No alias	RNA helicase family protein	0.02	Orthogroups_2024-Update
Glyma.13G342400	No alias	RNA helicase family protein	0.02	Orthogroups_2024-Update
Glyma.15G031900	No alias	RNA helicase family protein	0.01	Orthogroups_2024-Update
Pp1s427_10V6	No alias	atp-dependent rna	0.02	Orthogroups_2024-Update
Solyc01g079250	No alias	RNA helicase DEAH-box2	0.02	Orthogroups_2024-Update
Solyc12g089010	No alias	ATP-dependent RNA helicase, putative (AHRD V3.3 *** B9SMB4_RICCO)	0.01	Orthogroups_2024-Update

Type	GO Term	Name	Evidence	Source
MF	GO:0000166	nucleotide binding	None	Extended
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	IEA	InterProScan predictions
MF	GO:0003824	catalytic activity	None	Extended
MF	GO:0004386	helicase activity	IEA	InterProScan predictions
MF	GO:0005488	binding	None	Extended
MF	GO:0005524	ATP binding	IEA	InterProScan predictions
MF	GO:0008144	drug binding	None	Extended
MF	GO:0016462	pyrophosphatase activity	None	Extended
MF	GO:0016787	hydrolase activity	None	Extended
MF	GO:0016817	hydrolase activity, acting on acid anhydrides	None	Extended
MF	GO:0016818	hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides	None	Extended
MF	GO:0017076	purine nucleotide binding	None	Extended
MF	GO:0017111	nucleoside-triphosphatase activity	None	Extended
MF	GO:0030554	adenyl nucleotide binding	None	Extended
MF	GO:0032553	ribonucleotide binding	None	Extended
MF	GO:0032555	purine ribonucleotide binding	None	Extended
MF	GO:0032559	adenyl ribonucleotide binding	None	Extended
MF	GO:0035639	purine ribonucleoside triphosphate binding	None	Extended
MF	GO:0036094	small molecule binding	None	Extended
MF	GO:0043167	ion binding	None	Extended
MF	GO:0043168	anion binding	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
MF	GO:0097367	carbohydrate derivative binding	None	Extended
MF	GO:1901265	nucleoside phosphate binding	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended

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Type	GO Term	Name	Evidence	Source
MF	GO:0003700	DNA-binding transcription factor activity	IEP	Predicted GO
MF	GO:0004743	pyruvate kinase activity	IEP	Predicted GO
MF	GO:0005515	protein binding	IEP	Predicted GO
MF	GO:0008417	fucosyltransferase activity	IEP	Predicted GO
MF	GO:0015095	magnesium ion transmembrane transporter activity	IEP	Predicted GO
BP	GO:0015693	magnesium ion transport	IEP	Predicted GO
MF	GO:0030955	potassium ion binding	IEP	Predicted GO
BP	GO:0031123	RNA 3'-end processing	IEP	Predicted GO
BP	GO:0031124	mRNA 3'-end processing	IEP	Predicted GO
MF	GO:0031420	alkali metal ion binding	IEP	Predicted GO
MF	GO:0043565	sequence-specific DNA binding	IEP	Predicted GO
BP	GO:0050789	regulation of biological process	IEP	Predicted GO
BP	GO:0050794	regulation of cellular process	IEP	Predicted GO
BP	GO:0070838	divalent metal ion transport	IEP	Predicted GO
BP	GO:0072511	divalent inorganic cation transport	IEP	Predicted GO
MF	GO:0140110	transcription regulator activity	IEP	Predicted GO

InterPro domains	Description	Start	Stop
IPR001650	Helicase_C	263	390
IPR007502	Helicase-assoc_dom	453	520
IPR011545	DEAD/DEAH_box_helicase_dom	54	219

External Links

No external refs found!

evm.model.contig_2494.11

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation