evm.model.contig_2507.2

Description : (at2g05220 : 160.0) Ribosomal S17 family protein; FUNCTIONS IN: structural constituent of ribosome; INVOLVED IN: translation; LOCATED IN: cytosolic small ribosomal subunit, ribosome; CONTAINS InterPro DOMAIN/s: Ribosomal protein S17e (InterPro:IPR001210), Ribosomal protein S17e, conserved site (InterPro:IPR018273); BEST Arabidopsis thaliana protein match is: Ribosomal S17 family protein (TAIR:AT5G04800.4); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). & (reliability: 320.0) & (original description: no original description)

Gene families : OG_42_0002664 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0002664_tree

Sequence : coding (download), protein (download)

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	Porphyridium release: evm.model.contig_2507.2
Cluster	HCCA clusters: Cluster_25

Target	Alias	Description	ECC score	Gene Family Method
At3g10610	No alias	40S ribosomal protein S17-3...	0.05	Orthogroups_2024-Update
At5g04800	No alias	40S ribosomal protein S17-4...	0.05	Orthogroups_2024-Update
Bradi3g29060	No alias	Ribosomal S17 family protein	0.02	Orthogroups_2024-Update
Brara.B00154.1	No alias	component *(eS17) of small ribosomal-subunit (SSU) proteome	0.2	Orthogroups_2024-Update
Brara.C00178.1	No alias	component *(eS17) of small ribosomal-subunit (SSU) proteome	0.22	Orthogroups_2024-Update
Brara.E03000.1	No alias	component *(eS17) of small ribosomal-subunit (SSU) proteome	0.04	Orthogroups_2024-Update
Brara.J02711.1	No alias	component *(eS17) of small ribosomal-subunit (SSU) proteome	0.2	Orthogroups_2024-Update
Cre12.g498250	No alias	Ribosomal S17 family protein	0.2	Orthogroups_2024-Update
Glyma.07G219500	No alias	Ribosomal S17 family protein	0.13	Orthogroups_2024-Update
Glyma.10G076400	No alias	Ribosomal S17 family protein	0.08	Orthogroups_2024-Update
Glyma.20G017700	No alias	Ribosomal S17 family protein	0.22	Orthogroups_2024-Update
HORVU1Hr1G042220.1	No alias	component *(eS17) of small ribosomal-subunit (SSU) proteome	0.11	Orthogroups_2024-Update
Kfl00038_0080	kfl00038_0080_v1.1	(at5g04800 : 192.0) Ribosomal S17 family protein;...	0.07	Orthogroups_2024-Update
LOC_Os03g01900	No alias	40S ribosomal protein S17, putative, expressed	0.03	Orthogroups_2024-Update
LOC_Os10g27190	No alias	40S ribosomal protein S17, putative, expressed	0.03	Orthogroups_2024-Update
MA_184894g0010	No alias	(at5g04800 : 212.0) Ribosomal S17 family protein;...	0.06	Orthogroups_2024-Update
Mp8g18950.1	No alias	component RPS17 of SSU proteome	0.08	Orthogroups_2024-Update
PSME_00034734-RA	No alias	(at5g04800 : 198.0) Ribosomal S17 family protein;...	0.03	Orthogroups_2024-Update
Potri.008G017300	No alias	Ribosomal S17 family protein	0.05	Orthogroups_2024-Update
Potri.010G241200	No alias	Ribosomal S17 family protein	0.06	Orthogroups_2024-Update
Pp1s2_290V6	No alias	40s ribosomal protein	0.03	Orthogroups_2024-Update
Pp1s2_298V6	No alias	40s ribosomal protein	0.06	Orthogroups_2024-Update
Pp1s39_286V6	No alias	40s ribosomal protein	0.02	Orthogroups_2024-Update
Pp1s39_287V6	No alias	40s ribosomal protein	0.08	Orthogroups_2024-Update
Pp1s76_75V6	No alias	40s ribosomal protein	0.12	Orthogroups_2024-Update
Seita.9G218400.1	No alias	component *(eS17) of small ribosomal-subunit (SSU) proteome	0.17	Orthogroups_2024-Update
Seita.9G497100.1	No alias	component *(eS17) of small ribosomal-subunit (SSU) proteome	0.14	Orthogroups_2024-Update
Sobic.010G076400.1	No alias	component *(eS17) of small ribosomal-subunit (SSU) proteome	0.23	Orthogroups_2024-Update
Solyc05g055230	No alias	40S ribosomal protein S17 (AHRD V3.3 *** RS17_SOLLC)	0.17	Orthogroups_2024-Update
Solyc11g006690	No alias	40S ribosomal protein S17 (AHRD V3.3 *** RS17_SOLLC)	0.19	Orthogroups_2024-Update
Sopen05g033670	No alias	Ribosomal S17	0.11	Orthogroups_2024-Update
Sopen10g032640	No alias	Ribosomal S17	0.18	Orthogroups_2024-Update
Sopen11g002620	No alias	Ribosomal S17	0.25	Orthogroups_2024-Update

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003735	structural constituent of ribosome	IEA	InterProScan predictions
MF	GO:0005198	structural molecule activity	None	Extended
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005622	intracellular	IEA	InterProScan predictions
CC	GO:0005840	ribosome	IEA	InterProScan predictions
BP	GO:0006412	translation	IEA	InterProScan predictions
BP	GO:0006518	peptide metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009058	biosynthetic process	None	Extended
BP	GO:0009059	macromolecule biosynthetic process	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0019538	protein metabolic process	None	Extended
CC	GO:0032991	protein-containing complex	None	Extended
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
BP	GO:0034645	cellular macromolecule biosynthetic process	None	Extended
BP	GO:0043043	peptide biosynthetic process	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
CC	GO:0043226	organelle	None	Extended
CC	GO:0043228	non-membrane-bounded organelle	None	Extended
CC	GO:0043229	intracellular organelle	None	Extended
CC	GO:0043232	intracellular non-membrane-bounded organelle	None	Extended
BP	GO:0043603	cellular amide metabolic process	None	Extended
BP	GO:0043604	amide biosynthetic process	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0044249	cellular biosynthetic process	None	Extended
BP	GO:0044260	cellular macromolecule metabolic process	None	Extended
BP	GO:0044267	cellular protein metabolic process	None	Extended
BP	GO:0044271	cellular nitrogen compound biosynthetic process	None	Extended
CC	GO:0044424	intracellular part	None	Extended
CC	GO:0044444	cytoplasmic part	None	Extended
CC	GO:0044464	cell part	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
BP	GO:1901564	organonitrogen compound metabolic process	None	Extended
BP	GO:1901566	organonitrogen compound biosynthetic process	None	Extended
BP	GO:1901576	organic substance biosynthetic process	None	Extended
CC	GO:1990904	ribonucleoprotein complex	None	Extended

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Type	GO Term	Name	Evidence	Source
MF	GO:0019843	rRNA binding	IEP	Predicted GO
BP	GO:0022613	ribonucleoprotein complex biogenesis	IEP	Predicted GO
BP	GO:0042254	ribosome biogenesis	IEP	Predicted GO

InterPro domains	Description	Start	Stop
IPR001210	Ribosomal_S17e	1	120

External Links

No external refs found!

evm.model.contig_2507.2

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation