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  5. evm.model.contig_2706.9

evm.model.contig_2706.9


Description : (at3g22660 : 91.7) rRNA processing protein-related; CONTAINS InterPro DOMAIN/s: Eukaryotic rRNA processing (InterPro:IPR008610); Has 1021 Blast hits to 939 proteins in 244 species: Archae - 0; Bacteria - 62; Metazoa - 355; Fungi - 209; Plants - 58; Viruses - 0; Other Eukaryotes - 337 (source: NCBI BLink). & (reliability: 183.4) & (original description: no original description)


Gene families : OG_42_0004529 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0004529_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Porphyridium release: evm.model.contig_2706.9
Cluster HCCA clusters: Cluster_3

Target Alias Description ECC score Gene Family Method Actions
At3g22660 No alias Probable rRNA-processing protein EBP2 homolog... 0.02 Orthogroups_2024-Update
Bradi1g04477 No alias rRNA processing protein-related 0.02 Orthogroups_2024-Update
Brara.A02709.1 No alias pre-60S ribosomal subunit assembly factor *(EBP2) 0.02 Orthogroups_2024-Update
Brara.E01990.1 No alias pre-60S ribosomal subunit assembly factor *(EBP2) 0.05 Orthogroups_2024-Update
Cre07.g351750 No alias rRNA processing protein-related 0.03 Orthogroups_2024-Update
Glyma.10G154500 No alias rRNA processing protein-related 0.02 Orthogroups_2024-Update
Glyma.20G233800 No alias rRNA processing protein-related 0.01 Orthogroups_2024-Update
Sobic.010G098400.1 No alias pre-60S ribosomal subunit assembly factor *(EBP2) 0.02 Orthogroups_2024-Update
evm.model.tig00000880.12 No alias (at3g22660 : 117.0) rRNA processing protein-related;... 0.02 Orthogroups_2024-Update

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEP Predicted GO
MF GO:0003723 RNA binding IEP Predicted GO
MF GO:0004107 chorismate synthase activity IEP Predicted GO
MF GO:0005488 binding IEP Predicted GO
CC GO:0005730 nucleolus IEP Predicted GO
BP GO:0006364 rRNA processing IEP Predicted GO
MF GO:0008536 Ran GTPase binding IEP Predicted GO
BP GO:0016070 RNA metabolic process IEP Predicted GO
BP GO:0016072 rRNA metabolic process IEP Predicted GO
BP GO:0016226 iron-sulfur cluster assembly IEP Predicted GO
MF GO:0016838 carbon-oxygen lyase activity, acting on phosphates IEP Predicted GO
MF GO:0017016 Ras GTPase binding IEP Predicted GO
BP GO:0030163 protein catabolic process IEP Predicted GO
BP GO:0031163 metallo-sulfur cluster assembly IEP Predicted GO
MF GO:0031267 small GTPase binding IEP Predicted GO
BP GO:0034470 ncRNA processing IEP Predicted GO
BP GO:0034660 ncRNA metabolic process IEP Predicted GO
CC GO:0043226 organelle IEP Predicted GO
CC GO:0043229 intracellular organelle IEP Predicted GO
MF GO:0097159 organic cyclic compound binding IEP Predicted GO
MF GO:1901363 heterocyclic compound binding IEP Predicted GO
InterPro domains Description Start Stop
IPR008610 Ebp2 52 367
No external refs found!