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  5. Sopen01g008200

Sopen01g008200


Description : Reverse transcriptase (RNA-dependent DNA polymerase)


Gene families : OG_42_0000004 (Orthogroups_2024-Update) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Solanum release: Sopen01g008200
Cluster HCCA clusters: Cluster_7

Target Alias Description ECC score Gene Family Method Actions
Cre08.g358542 No alias Function unknown 0.01 Orthogroups_2024-Update
LOC_Os10g24400 No alias retrotransposon protein, putative, unclassified, expressed 0.02 Orthogroups_2024-Update
Solyc02g021130 No alias No description available 0.02 Orthogroups_2024-Update
Solyc08g044450 No alias No description available 0.02 Orthogroups_2024-Update
Solyc10g012010 No alias No description available 0.03 Orthogroups_2024-Update
Solyc10g052430 No alias No description available 0.03 Orthogroups_2024-Update
Sopen00g001490 No alias Reverse transcriptase (RNA-dependent DNA polymerase) 0.02 Orthogroups_2024-Update
Sopen00g005290 No alias Reverse transcriptase (RNA-dependent DNA polymerase) 0.03 Orthogroups_2024-Update
Sopen01g009050 No alias Reverse transcriptase (RNA-dependent DNA polymerase) 0.03 Orthogroups_2024-Update
Sopen01g012260 No alias Retroviral aspartyl protease 0.03 Orthogroups_2024-Update
Sopen01g015150 No alias Reverse transcriptase (RNA-dependent DNA polymerase) 0.03 Orthogroups_2024-Update
Sopen02g001080 No alias Integrase core domain 0.03 Orthogroups_2024-Update
Sopen02g012390 No alias Reverse transcriptase (RNA-dependent DNA polymerase) 0.02 Orthogroups_2024-Update
Sopen03g017250 No alias Reverse transcriptase (RNA-dependent DNA polymerase) 0.03 Orthogroups_2024-Update
Sopen03g021380 No alias Reverse transcriptase-like 0.02 Orthogroups_2024-Update
Sopen05g011340 No alias Integrase core domain 0.02 Orthogroups_2024-Update
Sopen05g026240 No alias Retroviral aspartyl protease 0.03 Orthogroups_2024-Update
Sopen06g010330 No alias Reverse transcriptase (RNA-dependent DNA polymerase) 0.03 Orthogroups_2024-Update
Sopen07g004430 No alias gag-polypeptide of LTR copia-type 0.03 Orthogroups_2024-Update
Sopen07g004930 No alias Reverse transcriptase (RNA-dependent DNA polymerase) 0.02 Orthogroups_2024-Update
Sopen07g008930 No alias Reverse transcriptase (RNA-dependent DNA polymerase) 0.01 Orthogroups_2024-Update
Sopen08g014830 No alias Reverse transcriptase (RNA-dependent DNA polymerase) 0.03 Orthogroups_2024-Update
Sopen09g025530 No alias Reverse transcriptase (RNA-dependent DNA polymerase) 0.03 Orthogroups_2024-Update
Sopen09g030490 No alias Retroviral aspartyl protease 0.03 Orthogroups_2024-Update
Sopen11g009960 No alias Retrotransposon gag protein 0.03 Orthogroups_2024-Update
Sopen11g012620 No alias Reverse transcriptase (RNA-dependent DNA polymerase) 0.02 Orthogroups_2024-Update
Sopen11g021290 No alias Reverse transcriptase (RNA-dependent DNA polymerase) 0.03 Orthogroups_2024-Update
Sopen11g023250 No alias Reverse transcriptase (RNA-dependent DNA polymerase) 0.03 Orthogroups_2024-Update
Sopen12g019980 No alias Integrase core domain 0.03 Orthogroups_2024-Update
evm.model.contig_2215.2 No alias (original description: no original description) 0.01 Orthogroups_2024-Update
evm.model.contig_2498.1 No alias (p31843|rrpo_oenbe : 132.0) RNA-directed DNA polymerase... 0.01 Orthogroups_2024-Update
evm.model.contig_3493.3 No alias no hits & (original description: no original description) 0.01 Orthogroups_2024-Update
evm.model.contig_3758.2 No alias no hits & (original description: no original description) 0.01 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEA InterProScan predictions
MF GO:0008270 zinc ion binding IEA InterProScan predictions
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Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence
InterPro domains Description Start Stop
IPR005162 Retrotrans_gag_dom 204 300
IPR001878 Znf_CCHC 408 424
IPR000477 RT_dom 741 900
No external refs found!