Description : (at4g36480 : 228.0) Encodes the LCB1 subunit of serine palmitoyltransferase. Together with the LCB2 subunit, forms a functional serine palmitoyltransferase complex, which catalyzes the first reaction of sphingolipid biosynthesis. Knockout of LCB1 was embryo lethal. Partial suppression of LCB1 expression led to smaller plants due to reduced cell expansion.; long-chain base1 (LCB1); FUNCTIONS IN: protein binding, serine C-palmitoyltransferase activity; INVOLVED IN: cell growth, sphingolipid biosynthetic process; LOCATED IN: endoplasmic reticulum; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 12 growth stages; CONTAINS InterPro DOMAIN/s: Pyridoxal phosphate-dependent transferase, major domain (InterPro:IPR015424), Aminotransferase, class I/classII (InterPro:IPR004839), Pyridoxal phosphate-dependent transferase, major region, subdomain 1 (InterPro:IPR015421); BEST Arabidopsis thaliana protein match is: long chain base2 (TAIR:AT5G23670.2); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). & (reliability: 456.0) & (original description: no original description)
Gene families : OG_42_0004027 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0004027_tree
Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.
Type | Description | Actions |
---|---|---|
Neighborhood | Porphyridium release: evm.model.contig_3409.7 | |
Cluster | HCCA clusters: Cluster_40 |
Target | Alias | Description | ECC score | Gene Family Method | Actions |
---|---|---|---|---|---|
Bradi1g67920 | No alias | long-chain base1 | 0.02 | Orthogroups_2024-Update | |
Sobic.001G434900.1 | No alias | catalytic component *(LCB1) of serine... | 0.01 | Orthogroups_2024-Update | |
evm.model.tig00020553.153 | No alias | (at4g36480 : 286.0) Encodes the LCB1 subunit of serine... | 0.01 | Orthogroups_2024-Update |
Type | GO Term | Name | Evidence | Source |
---|---|---|---|---|
BP | GO:0009058 | biosynthetic process | IEA | InterProScan predictions |
MF | GO:0030170 | pyridoxal phosphate binding | IEA | InterProScan predictions |
Type | GO Term | Name | Evidence | Source |
---|---|---|---|---|
MF | GO:0004357 | glutamate-cysteine ligase activity | IEP | Predicted GO |
MF | GO:0004594 | pantothenate kinase activity | IEP | Predicted GO |
MF | GO:0004652 | polynucleotide adenylyltransferase activity | IEP | Predicted GO |
CC | GO:0005669 | transcription factor TFIID complex | IEP | Predicted GO |
BP | GO:0006749 | glutathione metabolic process | IEP | Predicted GO |
BP | GO:0006750 | glutathione biosynthetic process | IEP | Predicted GO |
BP | GO:0006790 | sulfur compound metabolic process | IEP | Predicted GO |
BP | GO:0015936 | coenzyme A metabolic process | IEP | Predicted GO |
BP | GO:0015937 | coenzyme A biosynthetic process | IEP | Predicted GO |
MF | GO:0016772 | transferase activity, transferring phosphorus-containing groups | IEP | Predicted GO |
MF | GO:0016773 | phosphotransferase activity, alcohol group as acceptor | IEP | Predicted GO |
MF | GO:0016881 | acid-amino acid ligase activity | IEP | Predicted GO |
BP | GO:0019184 | nonribosomal peptide biosynthetic process | IEP | Predicted GO |
BP | GO:0033866 | nucleoside bisphosphate biosynthetic process | IEP | Predicted GO |
BP | GO:0034030 | ribonucleoside bisphosphate biosynthetic process | IEP | Predicted GO |
BP | GO:0034033 | purine nucleoside bisphosphate biosynthetic process | IEP | Predicted GO |
BP | GO:0043631 | RNA polyadenylation | IEP | Predicted GO |
BP | GO:0051186 | cofactor metabolic process | IEP | Predicted GO |
InterPro domains | Description | Start | Stop |
---|---|---|---|
IPR004839 | Aminotransferase_I/II | 126 | 502 |
No external refs found! |