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  5. evm.model.contig_3423.37

evm.model.contig_3423.37


Description : (at3g27530 : 100.0) This gene is predicted to encode a protein that functions as a Golgi apparatus structural component known as a golgin in mammals and yeast. A fluorescently-tagged version of GC6 co-localizes with Golgi markers, and this localization appears to be replicated using the C-terminal (225 aa) portion of the protein.; golgin candidate 6 (GC6); FUNCTIONS IN: protein transporter activity, binding; INVOLVED IN: intracellular protein transport, Golgi vesicle transport, vesicle fusion with Golgi apparatus; LOCATED IN: cytosol, Golgi apparatus; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Uso1/p115 like vesicle tethering protein, C-terminal (InterPro:IPR006955), Armadillo-type fold (InterPro:IPR016024), Uso1/p115 like vesicle tethering protein, head region (InterPro:IPR006953); Has 8674 Blast hits to 6651 proteins in 794 species: Archae - 167; Bacteria - 1154; Metazoa - 4083; Fungi - 784; Plants - 382; Viruses - 31; Other Eukaryotes - 2073 (source: NCBI BLink). & (reliability: 200.0) & (original description: no original description)


Gene families : OG_42_0004700 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0004700_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Porphyridium release: evm.model.contig_3423.37
Cluster HCCA clusters: Cluster_37

Target Alias Description ECC score Gene Family Method Actions
Sobic.008G118200.1 No alias Golgin-type membrane tethering protein *(GC6) 0.02 Orthogroups_2024-Update

Type GO Term Name Evidence Source
CC GO:0000139 Golgi membrane IEA InterProScan predictions
CC GO:0005737 cytoplasm IEA InterProScan predictions
BP GO:0006886 intracellular protein transport IEA InterProScan predictions
BP GO:0048280 vesicle fusion with Golgi apparatus IEA InterProScan predictions
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Type GO Term Name Evidence Source
BP GO:0000394 RNA splicing, via endonucleolytic cleavage and ligation IEP Predicted GO
MF GO:0003951 NAD+ kinase activity IEP Predicted GO
MF GO:0004888 transmembrane signaling receptor activity IEP Predicted GO
MF GO:0004970 ionotropic glutamate receptor activity IEP Predicted GO
MF GO:0005096 GTPase activator activity IEP Predicted GO
MF GO:0005230 extracellular ligand-gated ion channel activity IEP Predicted GO
CC GO:0005750 mitochondrial respiratory chain complex III IEP Predicted GO
CC GO:0005779 integral component of peroxisomal membrane IEP Predicted GO
CC GO:0005892 acetylcholine-gated channel complex IEP Predicted GO
BP GO:0006122 mitochondrial electron transport, ubiquinol to cytochrome c IEP Predicted GO
BP GO:0006388 tRNA splicing, via endonucleolytic cleavage and ligation IEP Predicted GO
BP GO:0006720 isoprenoid metabolic process IEP Predicted GO
BP GO:0006721 terpenoid metabolic process IEP Predicted GO
BP GO:0006739 NADP metabolic process IEP Predicted GO
BP GO:0006741 NADP biosynthetic process IEP Predicted GO
MF GO:0008066 glutamate receptor activity IEP Predicted GO
BP GO:0008299 isoprenoid biosynthetic process IEP Predicted GO
BP GO:0008610 lipid biosynthetic process IEP Predicted GO
MF GO:0008661 1-deoxy-D-xylulose-5-phosphate synthase activity IEP Predicted GO
MF GO:0015276 ligand-gated ion channel activity IEP Predicted GO
BP GO:0016114 terpenoid biosynthetic process IEP Predicted GO
BP GO:0016559 peroxisome fission IEP Predicted GO
MF GO:0016725 oxidoreductase activity, acting on CH or CH2 groups IEP Predicted GO
MF GO:0016744 transferase activity, transferring aldehyde or ketonic groups IEP Predicted GO
MF GO:0022824 transmitter-gated ion channel activity IEP Predicted GO
MF GO:0022834 ligand-gated channel activity IEP Predicted GO
MF GO:0022835 transmitter-gated channel activity IEP Predicted GO
BP GO:0022900 electron transport chain IEP Predicted GO
BP GO:0022904 respiratory electron transport chain IEP Predicted GO
MF GO:0030594 neurotransmitter receptor activity IEP Predicted GO
CC GO:0031231 intrinsic component of peroxisomal membrane IEP Predicted GO
CC GO:0031300 intrinsic component of organelle membrane IEP Predicted GO
CC GO:0031301 integral component of organelle membrane IEP Predicted GO
CC GO:0034702 ion channel complex IEP Predicted GO
MF GO:0038023 signaling receptor activity IEP Predicted GO
CC GO:0043235 receptor complex IEP Predicted GO
BP GO:0044255 cellular lipid metabolic process IEP Predicted GO
CC GO:0044438 microbody part IEP Predicted GO
CC GO:0044439 peroxisomal part IEP Predicted GO
CC GO:0044455 mitochondrial membrane part IEP Predicted GO
CC GO:0044459 plasma membrane part IEP Predicted GO
CC GO:0045275 respiratory chain complex III IEP Predicted GO
MF GO:0046429 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase activity IEP Predicted GO
BP GO:0048285 organelle fission IEP Predicted GO
MF GO:0052592 oxidoreductase activity, acting on CH or CH2 groups, with an iron-sulfur protein as acceptor IEP Predicted GO
MF GO:0060089 molecular transducer activity IEP Predicted GO
CC GO:0070069 cytochrome complex IEP Predicted GO
CC GO:0098797 plasma membrane protein complex IEP Predicted GO
CC GO:0098798 mitochondrial protein complex IEP Predicted GO
CC GO:0098800 inner mitochondrial membrane protein complex IEP Predicted GO
CC GO:0098802 plasma membrane receptor complex IEP Predicted GO
CC GO:0098803 respiratory chain complex IEP Predicted GO
CC GO:1902495 transmembrane transporter complex IEP Predicted GO
CC GO:1990351 transporter complex IEP Predicted GO
InterPro domains Description Start Stop
IPR006953 Vesicle_Uso1_P115_head 497 826
No external refs found!