evm.model.contig_3443.5

Description : (q6unt2|rl5_cucsa : 302.0) 60S ribosomal protein L5 - Cucumis sativus (Cucumber) & (at3g25520 : 298.0) Encodes ribosomal protein L5 that binds to 5S ribosomal RNA and in involved in its export from the nucleus to the cytoplasm. Identified in a screen for enhancers of as1. as1/pgy double mutants show defects in leaf vascular patterning and adaxial cell fate. Double mutant analysis indicates pgy genes function in the same pathway as REV, KAN1 and KAN2.; ribosomal protein L5 (ATL5); CONTAINS InterPro DOMAIN/s: Ribosomal protein L5, eukaryotic (InterPro:IPR005485), Ribosomal protein L18/L5 (InterPro:IPR005484); BEST Arabidopsis thaliana protein match is: ribosomal protein L5 B (TAIR:AT5G39740.2). & (reliability: 596.0) & (original description: no original description)

Gene families : OG_42_0001609 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0001609_tree

Sequence : coding (download), protein (download)

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	Porphyridium release: evm.model.contig_3443.5
Cluster	HCCA clusters: Cluster_25

Target	Alias	Description	ECC score	Gene Family Method
144921	No alias	ribosomal protein L5	0.1	Orthogroups_2024-Update
A4A49_19400	No alias	60s ribosomal protein l5	0.24	Orthogroups_2024-Update
At3g25520	No alias	RPL5A [Source:UniProtKB/TrEMBL;Acc:A0A178V891]	0.04	Orthogroups_2024-Update
At5g39740	No alias	RPL5B [Source:UniProtKB/TrEMBL;Acc:A0A178UJU5]	0.04	Orthogroups_2024-Update
Bradi1g13630	No alias	ribosomal protein L5 B	0.13	Orthogroups_2024-Update
Bradi4g13640	No alias	ribosomal protein L5	0.22	Orthogroups_2024-Update
Bradi5g09500	No alias	ribosomal protein L5 B	0.06	Orthogroups_2024-Update
Brara.C04001.1	No alias	component *(uL18) of large ribosomal-subunit (LSU) proteome	0.39	Orthogroups_2024-Update
Brara.C04002.1	No alias	component *(uL18) of large ribosomal-subunit (LSU) proteome	0.37	Orthogroups_2024-Update
Brara.F03014.1	No alias	component *(uL18) of large ribosomal-subunit (LSU) proteome	0.25	Orthogroups_2024-Update
Brara.G00424.1	No alias	component *(uL18) of large ribosomal-subunit (LSU) proteome	0.27	Orthogroups_2024-Update
Cre14.g621450	No alias	ribosomal protein L5 B	0.12	Orthogroups_2024-Update
GRMZM5G815894	No alias	ribosomal protein L5	0.05	Orthogroups_2024-Update
Glyma.07G059900	No alias	ribosomal protein L5 B	0.09	Orthogroups_2024-Update
Glyma.07G060000	No alias	ribosomal protein L5 B	0.1	Orthogroups_2024-Update
Glyma.13G280200	No alias	ribosomal protein L5 B	0.02	Orthogroups_2024-Update
Glyma.13G280300	No alias	ribosomal protein L5 B	0.12	Orthogroups_2024-Update
Glyma.16G028800	No alias	ribosomal protein L5 B	0.11	Orthogroups_2024-Update
HORVU2Hr1G073320.1	No alias	component *(uL18) of large ribosomal-subunit (LSU) proteome	0.03	Orthogroups_2024-Update
HORVU5Hr1G092630.1	No alias	component *(uL18) of large ribosomal-subunit (LSU) proteome	0.2	Orthogroups_2024-Update
LOC_Os01g67134	No alias	ribosomal L18p/L5e family protein, putative, expressed	0.07	Orthogroups_2024-Update
MA_70965g0010	No alias	(q6unt2\|rl5_cucsa : 417.0) 60S ribosomal protein L5 -...	0.16	Orthogroups_2024-Update
Mp4g15800.1	No alias	component RPL5 of LSU proteome component	0.12	Orthogroups_2024-Update
PSME_00012453-RA	No alias	(at5g39740 : 175.0) Encodes a ribosomal protein RPL5B...	0.01	Orthogroups_2024-Update
Potri.013G128600	No alias	ribosomal protein L5 B	0.03	Orthogroups_2024-Update
Potri.014G174000	No alias	ribosomal protein L5 B	0.11	Orthogroups_2024-Update
Potri.019G099000	No alias	ribosomal protein L5 B	0.13	Orthogroups_2024-Update
Pp1s364_3V6	No alias	ribosomal protein	0.17	Orthogroups_2024-Update
Pp1s38_329V6	No alias	ribosomal protein	0.12	Orthogroups_2024-Update
Pp1s97_115V6	No alias	ribosomal protein	0.3	Orthogroups_2024-Update
Seita.5G413500.1	No alias	component *(uL18) of large ribosomal-subunit (LSU) proteome	0.1	Orthogroups_2024-Update
Sobic.001G517600.1	No alias	component *(uL18) of large ribosomal-subunit (LSU) proteome	0.03	Orthogroups_2024-Update
Sobic.003G387900.1	No alias	component *(uL18) of large ribosomal-subunit (LSU) proteome	0.35	Orthogroups_2024-Update
Solyc06g007670	No alias	60S ribosomal protein L5 (AHRD V3.3 *** RL5_CUCSA)	0.32	Orthogroups_2024-Update
Solyc06g082870	No alias	60S ribosomal protein L5-like protein (AHRD V3.3 ***...	0.29	Orthogroups_2024-Update
Solyc09g020130	No alias	60S ribosomal protein L5 (AHRD V3.3 *** RL5_CUCSA)	0.08	Orthogroups_2024-Update
Sopen06g034230	No alias	Ribosomal L18p/L5e family	0.13	Orthogroups_2024-Update
Sopen09g013020	No alias	Ribosomal L18p/L5e family	0.03	Orthogroups_2024-Update
evm.model.tig00000194.49	No alias	(o65353\|rl5_helan : 322.0) 60S ribosomal protein L5 -...	0.16	Orthogroups_2024-Update

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	None	Extended
MF	GO:0003723	RNA binding	None	Extended
MF	GO:0003735	structural constituent of ribosome	IEA	InterProScan predictions
MF	GO:0005198	structural molecule activity	None	Extended
MF	GO:0005488	binding	None	Extended
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005622	intracellular	IEA	InterProScan predictions
CC	GO:0005840	ribosome	IEA	InterProScan predictions
BP	GO:0006412	translation	IEA	InterProScan predictions
BP	GO:0006518	peptide metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
MF	GO:0008097	5S rRNA binding	IEA	InterProScan predictions
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009058	biosynthetic process	None	Extended
BP	GO:0009059	macromolecule biosynthetic process	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0019538	protein metabolic process	None	Extended
MF	GO:0019843	rRNA binding	None	Extended
CC	GO:0032991	protein-containing complex	None	Extended
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
BP	GO:0034645	cellular macromolecule biosynthetic process	None	Extended
BP	GO:0043043	peptide biosynthetic process	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
CC	GO:0043226	organelle	None	Extended
CC	GO:0043228	non-membrane-bounded organelle	None	Extended
CC	GO:0043229	intracellular organelle	None	Extended
CC	GO:0043232	intracellular non-membrane-bounded organelle	None	Extended
BP	GO:0043603	cellular amide metabolic process	None	Extended
BP	GO:0043604	amide biosynthetic process	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0044249	cellular biosynthetic process	None	Extended
BP	GO:0044260	cellular macromolecule metabolic process	None	Extended
BP	GO:0044267	cellular protein metabolic process	None	Extended
BP	GO:0044271	cellular nitrogen compound biosynthetic process	None	Extended
CC	GO:0044424	intracellular part	None	Extended
CC	GO:0044444	cytoplasmic part	None	Extended
CC	GO:0044464	cell part	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended
BP	GO:1901564	organonitrogen compound metabolic process	None	Extended
BP	GO:1901566	organonitrogen compound biosynthetic process	None	Extended
BP	GO:1901576	organic substance biosynthetic process	None	Extended
CC	GO:1990904	ribonucleoprotein complex	None	Extended

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Type	GO Term	Name	Evidence	Source
MF	GO:0000213	tRNA-intron endonuclease activity	IEP	Predicted GO
BP	GO:0000394	RNA splicing, via endonucleolytic cleavage and ligation	IEP	Predicted GO
MF	GO:0000774	adenyl-nucleotide exchange factor activity	IEP	Predicted GO
MF	GO:0003743	translation initiation factor activity	IEP	Predicted GO
MF	GO:0003746	translation elongation factor activity	IEP	Predicted GO
MF	GO:0003924	GTPase activity	IEP	Predicted GO
MF	GO:0004549	tRNA-specific ribonuclease activity	IEP	Predicted GO
CC	GO:0005741	mitochondrial outer membrane	IEP	Predicted GO
CC	GO:0005852	eukaryotic translation initiation factor 3 complex	IEP	Predicted GO
BP	GO:0006388	tRNA splicing, via endonucleolytic cleavage and ligation	IEP	Predicted GO
BP	GO:0006414	translational elongation	IEP	Predicted GO
BP	GO:0006417	regulation of translation	IEP	Predicted GO
BP	GO:0006448	regulation of translational elongation	IEP	Predicted GO
BP	GO:0006449	regulation of translational termination	IEP	Predicted GO
BP	GO:0006452	translational frameshifting	IEP	Predicted GO
MF	GO:0008135	translation factor activity, RNA binding	IEP	Predicted GO
BP	GO:0009891	positive regulation of biosynthetic process	IEP	Predicted GO
BP	GO:0009893	positive regulation of metabolic process	IEP	Predicted GO
BP	GO:0010557	positive regulation of macromolecule biosynthetic process	IEP	Predicted GO
BP	GO:0010604	positive regulation of macromolecule metabolic process	IEP	Predicted GO
BP	GO:0010608	posttranscriptional regulation of gene expression	IEP	Predicted GO
BP	GO:0010628	positive regulation of gene expression	IEP	Predicted GO
CC	GO:0015934	large ribosomal subunit	IEP	Predicted GO
MF	GO:0016892	endoribonuclease activity, producing 3'-phosphomonoesters	IEP	Predicted GO
MF	GO:0016894	endonuclease activity, active with either ribo- or deoxyribonucleic acids and producing 3'-phosphomonoesters	IEP	Predicted GO
CC	GO:0019867	outer membrane	IEP	Predicted GO
BP	GO:0031325	positive regulation of cellular metabolic process	IEP	Predicted GO
BP	GO:0031328	positive regulation of cellular biosynthetic process	IEP	Predicted GO
CC	GO:0031966	mitochondrial membrane	IEP	Predicted GO
CC	GO:0031968	organelle outer membrane	IEP	Predicted GO
BP	GO:0032270	positive regulation of cellular protein metabolic process	IEP	Predicted GO
BP	GO:0034248	regulation of cellular amide metabolic process	IEP	Predicted GO
BP	GO:0034250	positive regulation of cellular amide metabolic process	IEP	Predicted GO
MF	GO:0042802	identical protein binding	IEP	Predicted GO
MF	GO:0042803	protein homodimerization activity	IEP	Predicted GO
MF	GO:0043021	ribonucleoprotein complex binding	IEP	Predicted GO
MF	GO:0043022	ribosome binding	IEP	Predicted GO
BP	GO:0043243	positive regulation of protein complex disassembly	IEP	Predicted GO
BP	GO:0043244	regulation of protein complex disassembly	IEP	Predicted GO
CC	GO:0044391	ribosomal subunit	IEP	Predicted GO
MF	GO:0044877	protein-containing complex binding	IEP	Predicted GO
BP	GO:0045727	positive regulation of translation	IEP	Predicted GO
BP	GO:0045901	positive regulation of translational elongation	IEP	Predicted GO
BP	GO:0045905	positive regulation of translational termination	IEP	Predicted GO
BP	GO:0048518	positive regulation of biological process	IEP	Predicted GO
BP	GO:0048522	positive regulation of cellular process	IEP	Predicted GO
MF	GO:0051087	chaperone binding	IEP	Predicted GO
BP	GO:0051128	regulation of cellular component organization	IEP	Predicted GO
BP	GO:0051130	positive regulation of cellular component organization	IEP	Predicted GO
BP	GO:0051173	positive regulation of nitrogen compound metabolic process	IEP	Predicted GO
BP	GO:0051247	positive regulation of protein metabolic process	IEP	Predicted GO
MF	GO:0060590	ATPase regulator activity	IEP	Predicted GO
CC	GO:0098588	bounding membrane of organelle	IEP	Predicted GO
CC	GO:0098805	whole membrane	IEP	Predicted GO

InterPro domains	Description	Start	Stop
IPR005485	Rbsml_L5_euk/L18_arc	11	172
IPR025607	Rbsml_L5e/L18P_C	187	278

External Links

No external refs found!

evm.model.contig_3443.5

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation