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  5. evm.model.contig_3460.4

evm.model.contig_3460.4


Description : no hits & (original description: no original description)


Gene families : OG_42_0000008 (Orthogroups_2024-Update) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Porphyridium release: evm.model.contig_3460.4
Cluster HCCA clusters: Cluster_12

Target Alias Description ECC score Gene Family Method Actions
Sopen00g011290 No alias gag-polypeptide of LTR copia-type 0.01 Orthogroups_2024-Update
Sopen01g006590 No alias Reverse transcriptase (RNA-dependent DNA polymerase) 0.02 Orthogroups_2024-Update
Sopen01g011350 No alias Domain of unknown function (DUF4219) 0.01 Orthogroups_2024-Update
Sopen01g034220 No alias Reverse transcriptase (RNA-dependent DNA polymerase) 0.03 Orthogroups_2024-Update
Sopen02g009580 No alias Integrase core domain 0.02 Orthogroups_2024-Update
Sopen02g020410 No alias Reverse transcriptase (RNA-dependent DNA polymerase) 0.01 Orthogroups_2024-Update
Sopen04g023600 No alias Reverse transcriptase (RNA-dependent DNA polymerase) 0.01 Orthogroups_2024-Update
Sopen04g025610 No alias Reverse transcriptase (RNA-dependent DNA polymerase) 0.01 Orthogroups_2024-Update
Sopen05g013410 No alias Integrase core domain 0.01 Orthogroups_2024-Update
Sopen05g019250 No alias Integrase core domain 0.03 Orthogroups_2024-Update
Sopen05g022390 No alias Reverse transcriptase (RNA-dependent DNA polymerase) 0.01 Orthogroups_2024-Update
Sopen06g009400 No alias Reverse transcriptase (RNA-dependent DNA polymerase) 0.01 Orthogroups_2024-Update
Sopen06g015850 No alias gag-polypeptide of LTR copia-type 0.03 Orthogroups_2024-Update
Sopen06g019130 No alias Reverse transcriptase (RNA-dependent DNA polymerase) 0.01 Orthogroups_2024-Update
Sopen07g008090 No alias Integrase core domain 0.01 Orthogroups_2024-Update
Sopen08g004660 No alias Reverse transcriptase (RNA-dependent DNA polymerase) 0.03 Orthogroups_2024-Update
Sopen09g017310 No alias Reverse transcriptase (RNA-dependent DNA polymerase) 0.02 Orthogroups_2024-Update
Sopen09g026670 No alias Reverse transcriptase (RNA-dependent DNA polymerase) 0.03 Orthogroups_2024-Update
Sopen10g023500 No alias Reverse transcriptase (RNA-dependent DNA polymerase) 0.03 Orthogroups_2024-Update
Sopen10g026940 No alias Reverse transcriptase (RNA-dependent DNA polymerase) 0.02 Orthogroups_2024-Update
Sopen12g022840 No alias Reverse transcriptase (RNA-dependent DNA polymerase) 0.01 Orthogroups_2024-Update
evm.model.contig_2212.2 No alias (original description: no original description) 0.04 Orthogroups_2024-Update
evm.model.contig_2214.1 No alias (p10978|polx_tobac : 144.0) Retrovirus-related Pol... 0.14 Orthogroups_2024-Update
evm.model.contig_2449.3 No alias (p10978|polx_tobac : 121.0) Retrovirus-related Pol... 0.08 Orthogroups_2024-Update
evm.model.contig_2497.2 No alias (p10978|polx_tobac : 110.0) Retrovirus-related Pol... 0.12 Orthogroups_2024-Update
evm.model.contig_4508.4 No alias (p10978|polx_tobac : 387.0) Retrovirus-related Pol... 0.08 Orthogroups_2024-Update
evm.model.contig_4533.1 No alias (p10978|polx_tobac : 122.0) Retrovirus-related Pol... 0.07 Orthogroups_2024-Update
evm.model.contig_459.3 No alias no hits & (original description: no original description) 0.09 Orthogroups_2024-Update

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence

No InterPro domains available for this sequence

No external refs found!