Description : (at1g09340 : 335.0) Encodes CHLOROPLAST RNA BINDING (CRB), a putative RNA-binding protein. CRB is important for the proper functioning of the chloroplast. Mutations in CRB also affects the circadian system, altering the expression of both oscillator and output genes.; chloroplast RNA binding (CRB); FUNCTIONS IN: coenzyme binding, binding, catalytic activity; INVOLVED IN: in 6 processes; LOCATED IN: in 10 components; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: NAD-dependent epimerase/dehydratase (InterPro:IPR001509), NAD(P)-binding domain (InterPro:IPR016040); BEST Arabidopsis thaliana protein match is: chloroplast stem-loop binding protein of 41 kDa (TAIR:AT3G63140.1); Has 5936 Blast hits to 5936 proteins in 1402 species: Archae - 366; Bacteria - 3891; Metazoa - 108; Fungi - 58; Plants - 234; Viruses - 3; Other Eukaryotes - 1276 (source: NCBI BLink). & (reliability: 670.0) & (original description: no original description)
Gene families : OG_42_0003865 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0003865_tree
Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.
Type | Description | Actions |
---|---|---|
Neighborhood | Porphyridium release: evm.model.contig_3495.2 | |
Cluster | HCCA clusters: Cluster_28 |
Target | Alias | Description | ECC score | Gene Family Method | Actions |
---|---|---|---|---|---|
228849 | No alias | chloroplast RNA binding | 0.02 | Orthogroups_2024-Update | |
At1g09340 | No alias | chloroplast RNA binding [Source:TAIR;Acc:AT1G09340] | 0.02 | Orthogroups_2024-Update | |
Bradi4g08030 | No alias | chloroplast RNA binding | 0.02 | Orthogroups_2024-Update | |
Brara.F00592.1 | No alias | endoribonuclease *(CSP41) | 0.02 | Orthogroups_2024-Update | |
Brara.I05274.1 | No alias | endoribonuclease *(CSP41) | 0.02 | Orthogroups_2024-Update | |
Glyma.19G227700 | No alias | chloroplast RNA binding | 0.05 | Orthogroups_2024-Update | |
Kfl00044_0410 | kfl00044_0410_v1.1 | (at1g09340 : 487.0) Encodes CHLOROPLAST RNA BINDING... | 0.02 | Orthogroups_2024-Update | |
LOC_Os12g23180 | No alias | 3-beta hydroxysteroid dehydrogenase/isomerase family... | 0.03 | Orthogroups_2024-Update | |
MA_196108g0010 | No alias | (at1g09340 : 139.0) Encodes CHLOROPLAST RNA BINDING... | 0.04 | Orthogroups_2024-Update | |
Pp1s71_283V6 | No alias | nad-dependent epimerase dehydratase | 0.04 | Orthogroups_2024-Update | |
Sobic.008G066100.1 | No alias | endoribonuclease *(CSP41) | 0.02 | Orthogroups_2024-Update | |
Solyc06g073260 | No alias | chloroplast RNA binding protein (AHRD V3.3 *** AT1G09340.1) | 0.05 | Orthogroups_2024-Update | |
Sopen06g029620 | No alias | NAD dependent epimerase/dehydratase family | 0.04 | Orthogroups_2024-Update | |
evm.model.tig00021181.14 | No alias | (at1g09340 : 348.0) Encodes CHLOROPLAST RNA BINDING... | 0.02 | Orthogroups_2024-Update | |
evm.model.tig00021720.14 | No alias | (at1g09340 : 242.0) Encodes CHLOROPLAST RNA BINDING... | 0.03 | Orthogroups_2024-Update |
Type | GO Term | Name | Evidence | Source |
---|---|---|---|---|
No GO annotation available for this sequence |
Type | GO Term | Name | Evidence | Source |
---|---|---|---|---|
BP | GO:0001505 | regulation of neurotransmitter levels | IEP | Predicted GO |
MF | GO:0003824 | catalytic activity | IEP | Predicted GO |
MF | GO:0004089 | carbonate dehydratase activity | IEP | Predicted GO |
MF | GO:0004325 | ferrochelatase activity | IEP | Predicted GO |
MF | GO:0004356 | glutamate-ammonia ligase activity | IEP | Predicted GO |
MF | GO:0004375 | glycine dehydrogenase (decarboxylating) activity | IEP | Predicted GO |
MF | GO:0004611 | phosphoenolpyruvate carboxykinase activity | IEP | Predicted GO |
MF | GO:0004655 | porphobilinogen synthase activity | IEP | Predicted GO |
BP | GO:0006099 | tricarboxylic acid cycle | IEP | Predicted GO |
BP | GO:0006101 | citrate metabolic process | IEP | Predicted GO |
BP | GO:0006541 | glutamine metabolic process | IEP | Predicted GO |
BP | GO:0006542 | glutamine biosynthetic process | IEP | Predicted GO |
BP | GO:0006544 | glycine metabolic process | IEP | Predicted GO |
BP | GO:0006546 | glycine catabolic process | IEP | Predicted GO |
BP | GO:0006783 | heme biosynthetic process | IEP | Predicted GO |
MF | GO:0008964 | phosphoenolpyruvate carboxylase activity | IEP | Predicted GO |
BP | GO:0009063 | cellular amino acid catabolic process | IEP | Predicted GO |
BP | GO:0009064 | glutamine family amino acid metabolic process | IEP | Predicted GO |
BP | GO:0009069 | serine family amino acid metabolic process | IEP | Predicted GO |
BP | GO:0009071 | serine family amino acid catabolic process | IEP | Predicted GO |
BP | GO:0009084 | glutamine family amino acid biosynthetic process | IEP | Predicted GO |
BP | GO:0010024 | phytochromobilin biosynthetic process | IEP | Predicted GO |
BP | GO:0015977 | carbon fixation | IEP | Predicted GO |
BP | GO:0016054 | organic acid catabolic process | IEP | Predicted GO |
MF | GO:0016211 | ammonia ligase activity | IEP | Predicted GO |
MF | GO:0016636 | oxidoreductase activity, acting on the CH-CH group of donors, iron-sulfur protein as acceptor | IEP | Predicted GO |
MF | GO:0016638 | oxidoreductase activity, acting on the CH-NH2 group of donors | IEP | Predicted GO |
MF | GO:0016642 | oxidoreductase activity, acting on the CH-NH2 group of donors, disulfide as acceptor | IEP | Predicted GO |
MF | GO:0016829 | lyase activity | IEP | Predicted GO |
MF | GO:0016835 | carbon-oxygen lyase activity | IEP | Predicted GO |
MF | GO:0016836 | hydro-lyase activity | IEP | Predicted GO |
MF | GO:0016880 | acid-ammonia (or amide) ligase activity | IEP | Predicted GO |
BP | GO:0016999 | antibiotic metabolic process | IEP | Predicted GO |
BP | GO:0032958 | inositol phosphate biosynthetic process | IEP | Predicted GO |
BP | GO:0033013 | tetrapyrrole metabolic process | IEP | Predicted GO |
BP | GO:0033014 | tetrapyrrole biosynthetic process | IEP | Predicted GO |
BP | GO:0042133 | neurotransmitter metabolic process | IEP | Predicted GO |
BP | GO:0042135 | neurotransmitter catabolic process | IEP | Predicted GO |
BP | GO:0042168 | heme metabolic process | IEP | Predicted GO |
BP | GO:0042737 | drug catabolic process | IEP | Predicted GO |
BP | GO:0043647 | inositol phosphate metabolic process | IEP | Predicted GO |
BP | GO:0046148 | pigment biosynthetic process | IEP | Predicted GO |
BP | GO:0046165 | alcohol biosynthetic process | IEP | Predicted GO |
BP | GO:0046173 | polyol biosynthetic process | IEP | Predicted GO |
BP | GO:0046395 | carboxylic acid catabolic process | IEP | Predicted GO |
MF | GO:0050662 | coenzyme binding | IEP | Predicted GO |
MF | GO:0050897 | cobalt ion binding | IEP | Predicted GO |
BP | GO:0051202 | phytochromobilin metabolic process | IEP | Predicted GO |
BP | GO:0072350 | tricarboxylic acid metabolic process | IEP | Predicted GO |
BP | GO:1901564 | organonitrogen compound metabolic process | IEP | Predicted GO |
BP | GO:1901605 | alpha-amino acid metabolic process | IEP | Predicted GO |
BP | GO:1901606 | alpha-amino acid catabolic process | IEP | Predicted GO |
InterPro domains | Description | Start | Stop |
---|---|---|---|
IPR016040 | NAD(P)-bd_dom | 51 | 207 |
No external refs found! |